Lineage for Protein: Class II MHC beta chain, N-terminal domain

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2937550Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 2937551Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 2937552Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)
  6. 2938367Protein Class II MHC beta chain, N-terminal domain [88819] (15 species)

Species:

  1. 2938368Human (Homo sapiens), HLA-DM [TaxId:9606] [88820] (1 PDB entry)
  2. 2938370Human (Homo sapiens), HLA-DQ2 [TaxId:9606] [102835] (1 PDB entry)
  3. 2938373Human (Homo sapiens), HLA-DQ6 [TaxId:9606] [102836] (1 PDB entry)
    • Domain for 1uvq:
      • 2938374Domain d1uvqb2: 1uvq B:3-94 [100065]
        Other proteins in same PDB: d1uvqa1, d1uvqa2, d1uvqb1
        complexed with a hypocretin peptide
        complexed with acy, gly, nag, zn

        fragment; missing more than one-third of the common structure and/or sequence
  4. 2938375Human (Homo sapiens), HLA-DQ8 [TaxId:9606] [88825] (1 PDB entry)
    • Domain for 1jk8:
      • 2938376Domain d1jk8b2: 1jk8 B:3-94 [63148]
        Other proteins in same PDB: d1jk8a1, d1jk8a2, d1jk8b1
        complexed with a human insulin peptide
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
  5. 2938377Human (Homo sapiens), HLA-DR1 [TaxId:9606] [88821] (20 PDB entries)
    1. Domains for 1aqd:
      1. 2938380Domain d1aqdb2: 1aqd B:4-92 [38160]
        Other proteins in same PDB: d1aqda1, d1aqda2, d1aqdb1, d1aqdd1, d1aqdd2, d1aqde1, d1aqdg1, d1aqdg2, d1aqdh1, d1aqdj1, d1aqdj2, d1aqdk1
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938381Domain d1aqde2: 1aqd E:4-92 [38162]
        Other proteins in same PDB: d1aqda1, d1aqda2, d1aqdb1, d1aqdd1, d1aqdd2, d1aqde1, d1aqdg1, d1aqdg2, d1aqdh1, d1aqdj1, d1aqdj2, d1aqdk1
        fragment; missing more than one-third of the common structure and/or sequence
      3. 2938382Domain d1aqdh2: 1aqd H:4-92 [38164]
        Other proteins in same PDB: d1aqda1, d1aqda2, d1aqdb1, d1aqdd1, d1aqdd2, d1aqde1, d1aqdg1, d1aqdg2, d1aqdh1, d1aqdj1, d1aqdj2, d1aqdk1
        fragment; missing more than one-third of the common structure and/or sequence
      4. 2938383Domain d1aqdk2: 1aqd K:4-92 [38166]
        Other proteins in same PDB: d1aqda1, d1aqda2, d1aqdb1, d1aqdd1, d1aqdd2, d1aqde1, d1aqdg1, d1aqdg2, d1aqdh1, d1aqdj1, d1aqdj2, d1aqdk1
        fragment; missing more than one-third of the common structure and/or sequence
    2. Domains for 1dlh:
      1. 2938402Domain d1dlhb2: 1dlh B:3-92 [38172]
        Other proteins in same PDB: d1dlha1, d1dlha2, d1dlhb1, d1dlhd1, d1dlhd2, d1dlhe1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938403Domain d1dlhe2: 1dlh E:3-92 [38174]
        Other proteins in same PDB: d1dlha1, d1dlha2, d1dlhb1, d1dlhd1, d1dlhd2, d1dlhe1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
    3. Domain for 1fyt:
    4. Domains for 1h15:
      1. 2938407Domain d1h15b2: 1h15 B:2-92 [76457]
        Other proteins in same PDB: d1h15a1, d1h15a2, d1h15b1, d1h15d1, d1h15d2, d1h15e1
        complexed with a peptide from Epstein barr virus DNA polymerase, chains C and H
        protein/DNA complex; complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938408Domain d1h15e2: 1h15 E:2-92 [76461]
        Other proteins in same PDB: d1h15a1, d1h15a2, d1h15b1, d1h15d1, d1h15d2, d1h15e1
        complexed with a peptide from Epstein barr virus DNA polymerase, chains C and H
        protein/DNA complex; complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
    5. Domain for 1hxy:
    6. Domain for 1kg0:
    7. Domain for 1klg:
    8. Domain for 1klu:
    9. Domain for 1lo5:
    10. Domain for 1pyw:
    11. Domains for 1r5i:
      1. 2938392Domain d1r5ib2: 1r5i B:1-92 [97090]
        Other proteins in same PDB: d1r5ia1, d1r5ia2, d1r5ib1, d1r5id1, d1r5id2, d1r5ie1, d1r5ie2, d1r5if1, d1r5ih1, d1r5ih2
        complexed with po4
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938393Domain d1r5if2: 1r5i F:1-92 [97095]
        Other proteins in same PDB: d1r5ia1, d1r5ia2, d1r5ib1, d1r5id1, d1r5id2, d1r5ie1, d1r5ie2, d1r5if1, d1r5ih1, d1r5ih2
        complexed with po4
        fragment; missing more than one-third of the common structure and/or sequence
    12. Domains for 1seb:
      1. 2938400Domain d1sebb2: 1seb B:1-92 [38176]
        Other proteins in same PDB: d1seba1, d1seba2, d1sebb1, d1sebd1, d1sebd2, d1sebe1, d1sebe2, d1sebf1, d1sebh1, d1sebh2
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938401Domain d1sebf2: 1seb F:1-92 [38178]
        Other proteins in same PDB: d1seba1, d1seba2, d1sebb1, d1sebd1, d1sebd2, d1sebe1, d1sebe2, d1sebf1, d1sebh1, d1sebh2
        fragment; missing more than one-third of the common structure and/or sequence
    13. Domain for 2iam:
    14. Domains for 2ian:
      1. 2938396Domain d2ianb2: 2ian B:3-92 [137165]
        Other proteins in same PDB: d2iana1, d2iana2, d2iana3, d2ianb1, d2iand1, d2iand2, d2iane1, d2iane2, d2ianf1, d2ianf2, d2iang1, d2iani1, d2iani2, d2ianj1, d2ianj2, d2iank1, d2iank2, d2ianl1, d2iann1, d2iann2, d2iano1, d2iano2, d2ianp1, d2ianp2, d2ianq1, d2ians1, d2ians2, d2iant1, d2iant2
        automated match to d1klub2
        mutant

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938397Domain d2iang2: 2ian G:2-92 [137169]
        Other proteins in same PDB: d2iana1, d2iana2, d2iana3, d2ianb1, d2iand1, d2iand2, d2iane1, d2iane2, d2ianf1, d2ianf2, d2iang1, d2iani1, d2iani2, d2ianj1, d2ianj2, d2iank1, d2iank2, d2ianl1, d2iann1, d2iann2, d2iano1, d2iano2, d2ianp1, d2ianp2, d2ianq1, d2ians1, d2ians2, d2iant1, d2iant2
        automated match to d1klub2
        mutant

        fragment; missing more than one-third of the common structure and/or sequence
      3. 2938398Domain d2ianl2: 2ian L:3-92 [137173]
        Other proteins in same PDB: d2iana1, d2iana2, d2iana3, d2ianb1, d2iand1, d2iand2, d2iane1, d2iane2, d2ianf1, d2ianf2, d2iang1, d2iani1, d2iani2, d2ianj1, d2ianj2, d2iank1, d2iank2, d2ianl1, d2iann1, d2iann2, d2iano1, d2iano2, d2ianp1, d2ianp2, d2ianq1, d2ians1, d2ians2, d2iant1, d2iant2
        automated match to d1klub2
        mutant

        fragment; missing more than one-third of the common structure and/or sequence
      4. 2938399Domain d2ianq2: 2ian Q:3-92 [137177]
        Other proteins in same PDB: d2iana1, d2iana2, d2iana3, d2ianb1, d2iand1, d2iand2, d2iane1, d2iane2, d2ianf1, d2ianf2, d2iang1, d2iani1, d2iani2, d2ianj1, d2ianj2, d2iank1, d2iank2, d2ianl1, d2iann1, d2iann2, d2iano1, d2iano2, d2ianp1, d2ianp2, d2ianq1, d2ians1, d2ians2, d2iant1, d2iant2
        automated match to d1klub2
        mutant

        fragment; missing more than one-third of the common structure and/or sequence
    15. Domain for 2seb:
    16. Domains for 4e41:
      1. 2938384Domain d4e41b1: 4e41 B:4-92 [220250]
        Other proteins in same PDB: d4e41a1, d4e41a2, d4e41b2, d4e41d1, d4e41d2, d4e41e1, d4e41e2, d4e41f1, d4e41f2, d4e41g2, d4e41i1, d4e41i2, d4e41j1, d4e41j2
        automated match to d1klub2
        complexed with na; mutant

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938385Domain d4e41g1: 4e41 G:4-92 [220258]
        Other proteins in same PDB: d4e41a1, d4e41a2, d4e41b2, d4e41d1, d4e41d2, d4e41e1, d4e41e2, d4e41f1, d4e41f2, d4e41g2, d4e41i1, d4e41i2, d4e41j1, d4e41j2
        automated match to d1klub2
        complexed with na; mutant

        fragment; missing more than one-third of the common structure and/or sequence
    17. Domains for 4i5b:
      1. 2938387Domain d4i5bb1: 4i5b B:2-92 [234812]
        Other proteins in same PDB: d4i5ba1, d4i5ba2, d4i5bb2, d4i5bd1, d4i5bd2, d4i5be2
        automated match to d4i5be1
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938388Domain d4i5be1: 4i5b E:2-92 [229427]
        Other proteins in same PDB: d4i5ba1, d4i5ba2, d4i5bb2, d4i5bd1, d4i5bd2, d4i5be2
        automated match to d1klub2
        fragment; missing more than one-third of the common structure and/or sequence
    18. Domains for 5lax:
      1. 2938404Domain d5laxb1: 5lax B:1-92 [327022]
        Other proteins in same PDB: d5laxa1, d5laxa2, d5laxa3, d5laxb2, d5laxb3, d5laxc1, d5laxc2, d5laxd2, d5laxd3
        automated match to d1klub2
        complexed with mla

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938405Domain d5laxd1: 5lax D:4-92 [327004]
        Other proteins in same PDB: d5laxa1, d5laxa2, d5laxa3, d5laxb2, d5laxb3, d5laxc1, d5laxc2, d5laxd2, d5laxd3
        automated match to d1klub2
        complexed with mla

        fragment; missing more than one-third of the common structure and/or sequence
    19. Domain for 6bin:
    20. Domain for 6cqn:
  6. 2938411Human (Homo sapiens), HLA-DR2 [TaxId:9606] [88822] (13 PDB entries)
    Uniprot P04229 30-219
    1. Domains for 1bx2:
      1. 2938421Domain d1bx2b2: 1bx2 B:3-92 [38184]
        Other proteins in same PDB: d1bx2a1, d1bx2a2, d1bx2b1, d1bx2d1, d1bx2d2, d1bx2e1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938422Domain d1bx2e2: 1bx2 E:3-92 [38186]
        Other proteins in same PDB: d1bx2a1, d1bx2a2, d1bx2b1, d1bx2d1, d1bx2d2, d1bx2e1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
    2. Domains for 1fv1:
      1. 2938412Domain d1fv1b2: 1fv1 B:1-92 [38180]
        Other proteins in same PDB: d1fv1a1, d1fv1a2, d1fv1b1, d1fv1d1, d1fv1d2, d1fv1e1
        complexed with gol, so4
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938413Domain d1fv1e2: 1fv1 E:1-92 [38182]
        Other proteins in same PDB: d1fv1a1, d1fv1a2, d1fv1b1, d1fv1d1, d1fv1d2, d1fv1e1
        complexed with gol, so4
        fragment; missing more than one-third of the common structure and/or sequence
    3. Domain for 1hqr:
    4. Domain for 1jwm:
    5. Domain for 1jws:
    6. Domain for 1jwu:
    7. Domain for 1sje:
    8. Domain for 1sjh:
    9. Domains for 1t5w:
      1. 2938416Domain d1t5wb2: 1t5w B:1-92 [106484]
        Other proteins in same PDB: d1t5wa1, d1t5wa2, d1t5wb1, d1t5wd1, d1t5wd2, d1t5we1
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938417Domain d1t5we2: 1t5w E:1-92 [106488]
        Other proteins in same PDB: d1t5wa1, d1t5wa2, d1t5wb1, d1t5wd1, d1t5wd2, d1t5we1
        fragment; missing more than one-third of the common structure and/or sequence
    10. Domain for 1t5x:
    11. Domain for 1ymm:
    12. Domains for 1zgl:
      1. 2938426Domain d1zglb2: 1zgl B:1-92 [125034]
        Other proteins in same PDB: d1zgla1, d1zgla2, d1zglb1, d1zgld1, d1zgld2, d1zgle1, d1zglg1, d1zglg2, d1zglh1, d1zglj1, d1zglj2, d1zglk1, d1zglp1, d1zglp2, d1zglp3, d1zglr1, d1zglr2, d1zglr3, d1zglt1, d1zglt2, d1zglt3, d1zglv1, d1zglv2, d1zglv3
        automatically matched to d1fv1b2
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938427Domain d1zgle2: 1zgl E:2-92 [125038]
        Other proteins in same PDB: d1zgla1, d1zgla2, d1zglb1, d1zgld1, d1zgld2, d1zgle1, d1zglg1, d1zglg2, d1zglh1, d1zglj1, d1zglj2, d1zglk1, d1zglp1, d1zglp2, d1zglp3, d1zglr1, d1zglr2, d1zglr3, d1zglt1, d1zglt2, d1zglt3, d1zglv1, d1zglv2, d1zglv3
        automatically matched to d1fv1b2
        fragment; missing more than one-third of the common structure and/or sequence
      3. 2938428Domain d1zglh2: 1zgl H:1-92 [125042]
        Other proteins in same PDB: d1zgla1, d1zgla2, d1zglb1, d1zgld1, d1zgld2, d1zgle1, d1zglg1, d1zglg2, d1zglh1, d1zglj1, d1zglj2, d1zglk1, d1zglp1, d1zglp2, d1zglp3, d1zglr1, d1zglr2, d1zglr3, d1zglt1, d1zglt2, d1zglt3, d1zglv1, d1zglv2, d1zglv3
        automatically matched to d1fv1b2
        fragment; missing more than one-third of the common structure and/or sequence
      4. 2938429Domain d1zglk2: 1zgl K:1-92 [125046]
        Other proteins in same PDB: d1zgla1, d1zgla2, d1zglb1, d1zgld1, d1zgld2, d1zgle1, d1zglg1, d1zglg2, d1zglh1, d1zglj1, d1zglj2, d1zglk1, d1zglp1, d1zglp2, d1zglp3, d1zglr1, d1zglr2, d1zglr3, d1zglt1, d1zglt2, d1zglt3, d1zglv1, d1zglv2, d1zglv3
        automatically matched to d1fv1b2
        fragment; missing more than one-third of the common structure and/or sequence
    13. Domain for 2nna:
  7. 2938431Human (Homo sapiens), HLA-DR3 [TaxId:9606] [88823] (1 PDB entry)
  8. 2938433Human (Homo sapiens), HLA-DR4 [TaxId:9606] [88824] (9 PDB entries)
    1. Domain for 1d5m:
    2. Domain for 1d5x:
    3. Domain for 1d5z:
    4. Domain for 1d6e:
    5. Domain for 1j8h:
    6. Domain for 2g9h:
    7. Domains for 2icw:
      1. 2938438Domain d2icwb2: 2icw B:1-92 [137246]
        Other proteins in same PDB: d2icwa1, d2icwa2, d2icwb1, d2icwd1, d2icwd2, d2icwe1, d2icwg_, d2icwh_, d2icwj1, d2icwj2, d2icwl2, d2icwl3
        automatically matched to d1d5xb2
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938439Domain d2icwe2: 2icw E:1-92 [137250]
        Other proteins in same PDB: d2icwa1, d2icwa2, d2icwb1, d2icwd1, d2icwd2, d2icwe1, d2icwg_, d2icwh_, d2icwj1, d2icwj2, d2icwl2, d2icwl3
        automatically matched to d1d5xb2
        fragment; missing more than one-third of the common structure and/or sequence
    8. Domain for 2ipk:
    9. Domains for 2oje:
      1. 2938443Domain d2ojeb2: 2oje B:1-92 [139106]
        Other proteins in same PDB: d2ojea1, d2ojea2, d2ojeb1, d2ojed1, d2ojee1, d2ojee2, d2ojef1, d2ojeh1
        automatically matched to d1d5xb2
        complexed with po4

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938444Domain d2ojef2: 2oje F:1-92 [139111]
        Other proteins in same PDB: d2ojea1, d2ojea2, d2ojeb1, d2ojed1, d2ojee1, d2ojee2, d2ojef1, d2ojeh1
        automatically matched to d1d5xb2
        complexed with po4

        fragment; missing more than one-third of the common structure and/or sequence
  9. 2938445Mouse (Mus musculus), H2-DM [TaxId:10090] [88831] (1 PDB entry)
  10. 2938447Mouse (Mus musculus), I-A(G7) [TaxId:10090] [88830] (4 PDB entries)
    1. Domain for 1es0:
    2. Domains for 1f3j:
      1. 2938451Domain d1f3jb2: 1f3j B:4-93 [38220]
        Other proteins in same PDB: d1f3ja1, d1f3ja2, d1f3jb1, d1f3jd1, d1f3jd2, d1f3je1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938452Domain d1f3je2: 1f3j E:4-93 [38222]
        Other proteins in same PDB: d1f3ja1, d1f3ja2, d1f3jb1, d1f3jd1, d1f3jd2, d1f3je1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
    3. Domain for 2pxy:
    4. Domain for 2z31:
  11. 2938453Mouse (Mus musculus), I-AB [TaxId:10090] [88828] (6 PDB entries)
    1. Domains for 1lnu:
      1. 2938455Domain d1lnub2: 1lnu B:1-120 [74100]
        Other proteins in same PDB: d1lnua1, d1lnua2, d1lnub1, d1lnuc1, d1lnuc2, d1lnud1, d1lnue1, d1lnue2, d1lnuf1, d1lnug1, d1lnug2, d1lnuh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938456Domain d1lnud2: 1lnu D:1-120 [74104]
        Other proteins in same PDB: d1lnua1, d1lnua2, d1lnub1, d1lnuc1, d1lnuc2, d1lnud1, d1lnue1, d1lnue2, d1lnuf1, d1lnug1, d1lnug2, d1lnuh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      3. 2938457Domain d1lnuf2: 1lnu F:1-120 [74108]
        Other proteins in same PDB: d1lnua1, d1lnua2, d1lnub1, d1lnuc1, d1lnuc2, d1lnud1, d1lnue1, d1lnue2, d1lnuf1, d1lnug1, d1lnug2, d1lnuh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      4. 2938458Domain d1lnuh2: 1lnu H:1-120 [74112]
        Other proteins in same PDB: d1lnua1, d1lnua2, d1lnub1, d1lnuc1, d1lnuc2, d1lnud1, d1lnue1, d1lnue2, d1lnuf1, d1lnug1, d1lnug2, d1lnuh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
    2. Domain for 1muj:
    3. Domains for 3c5z:
      1. 2938459Domain d3c5zd2: 3c5z D:1-120 [155956]
        Other proteins in same PDB: d3c5za1, d3c5za2, d3c5zb1, d3c5zb2, d3c5zc1, d3c5zc2, d3c5zd1, d3c5ze1, d3c5ze2, d3c5zf1, d3c5zf2, d3c5zg1, d3c5zg2, d3c5zh1
        automated match to d1lnub2
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938460Domain d3c5zh2: 3c5z H:1-120 [155960]
        Other proteins in same PDB: d3c5za1, d3c5za2, d3c5zb1, d3c5zb2, d3c5zc1, d3c5zc2, d3c5zd1, d3c5ze1, d3c5ze2, d3c5zf1, d3c5zf2, d3c5zg1, d3c5zg2, d3c5zh1
        automated match to d1lnub2
        fragment; missing more than one-third of the common structure and/or sequence
    4. Domains for 3c60:
      1. 2938462Domain d3c60d2: 3c60 D:1-120 [155964]
        Other proteins in same PDB: d3c60a1, d3c60a2, d3c60b1, d3c60b2, d3c60c1, d3c60c2, d3c60d1, d3c60e1, d3c60e2, d3c60f1, d3c60f2, d3c60g1, d3c60g2, d3c60h1
        automated match to d1lnub2
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938463Domain d3c60h2: 3c60 H:1-120 [155968]
        Other proteins in same PDB: d3c60a1, d3c60a2, d3c60b1, d3c60b2, d3c60c1, d3c60c2, d3c60d1, d3c60e1, d3c60e2, d3c60f1, d3c60f2, d3c60g1, d3c60g2, d3c60h1
        automated match to d1lnub2
        fragment; missing more than one-third of the common structure and/or sequence
    5. Domains for 3c6l:
      1. 2938464Domain d3c6ld2: 3c6l D:1-120 [155982]
        Other proteins in same PDB: d3c6la1, d3c6la2, d3c6lc1, d3c6lc2, d3c6ld1, d3c6le1, d3c6le2, d3c6lg1, d3c6lg2, d3c6lh1
        automatically matched to d1lnub2
        complexed with ca

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938465Domain d3c6lh2: 3c6l H:1-120 [155988]
        Other proteins in same PDB: d3c6la1, d3c6la2, d3c6lc1, d3c6lc2, d3c6ld1, d3c6le1, d3c6le2, d3c6lg1, d3c6lg2, d3c6lh1
        automatically matched to d1lnub2
        complexed with ca

        fragment; missing more than one-third of the common structure and/or sequence
    6. Domain for 4p46:
  12. 2938466Mouse (Mus musculus), I-AD [TaxId:10090] [88829] (2 PDB entries)
    1. Domain for 1iao:
    2. Domain for 2iad:
  13. 2938469Mouse (Mus musculus), I-AK [TaxId:10090] [88826] (3 PDB entries)
    1. Domains for 1d9k:
      1. 2938471Domain d1d9kd2: 1d9k D:2-92 [38202]
        Other proteins in same PDB: d1d9ka_, d1d9kb_, d1d9kc1, d1d9kc2, d1d9kd1, d1d9ke_, d1d9kf_, d1d9kg1, d1d9kg2, d1d9kh1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938472Domain d1d9kh2: 1d9k H:2-92 [38204]
        Other proteins in same PDB: d1d9ka_, d1d9kb_, d1d9kc1, d1d9kc2, d1d9kd1, d1d9ke_, d1d9kf_, d1d9kg1, d1d9kg2, d1d9kh1
        complexed with nag
        fragment; missing more than one-third of the common structure and/or sequence
    2. Domain for 1iak:
    3. Domain for 1jl4:
  14. 2938474Mouse (Mus musculus), I-AU [TaxId:10090] [89860] (2 PDB entries)
    1. Domain for 1k2d:
    2. Domains for 1u3h:
      1. 2938476Domain d1u3hd2: 1u3h D:1-92 [119513]
        Other proteins in same PDB: d1u3ha1, d1u3hb1, d1u3hc1, d1u3hc2, d1u3hc3, d1u3hd1, d1u3he_, d1u3hf_, d1u3hg1, d1u3hg2, d1u3hg3, d1u3hh1
        automated match to d1k2db2
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938477Domain d1u3hh2: 1u3h H:1-92 [119517]
        Other proteins in same PDB: d1u3ha1, d1u3hb1, d1u3hc1, d1u3hc2, d1u3hc3, d1u3hd1, d1u3he_, d1u3hf_, d1u3hg1, d1u3hg2, d1u3hg3, d1u3hh1
        automated match to d1k2db2
        fragment; missing more than one-third of the common structure and/or sequence
  15. 2938478Mouse (Mus musculus), I-EK [TaxId:10090] [88827] (10 PDB entries)
    1. Domains for 1fne:
      1. 2938481Domain d1fneb2: 1fne B:4-92 [59899]
        Other proteins in same PDB: d1fnea1, d1fnea2, d1fneb1, d1fnec1, d1fnec2, d1fned1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938482Domain d1fned2: 1fne D:4-92 [59903]
        Other proteins in same PDB: d1fnea1, d1fnea2, d1fneb1, d1fnec1, d1fnec2, d1fned1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
    2. Domains for 1fng:
      1. 2938479Domain d1fngb2: 1fng B:4-92 [59907]
        Other proteins in same PDB: d1fnga1, d1fnga2, d1fngb1, d1fngc1, d1fngc2, d1fngd1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938480Domain d1fngd2: 1fng D:4-92 [59911]
        Other proteins in same PDB: d1fnga1, d1fnga2, d1fngb1, d1fngc1, d1fngc2, d1fngd1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
    3. Domains for 1i3r:
      1. 2938487Domain d1i3rb2: 1i3r B:1-120 [61623]
        Other proteins in same PDB: d1i3ra1, d1i3ra2, d1i3rb1, d1i3rc1, d1i3rc2, d1i3rd1, d1i3re1, d1i3re2, d1i3rf1, d1i3rg1, d1i3rg2, d1i3rh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag; mutant

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938488Domain d1i3rd2: 1i3r D:1-120 [61627]
        Other proteins in same PDB: d1i3ra1, d1i3ra2, d1i3rb1, d1i3rc1, d1i3rc2, d1i3rd1, d1i3re1, d1i3re2, d1i3rf1, d1i3rg1, d1i3rg2, d1i3rh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag; mutant

        fragment; missing more than one-third of the common structure and/or sequence
      3. 2938489Domain d1i3rf2: 1i3r F:1-120 [61631]
        Other proteins in same PDB: d1i3ra1, d1i3ra2, d1i3rb1, d1i3rc1, d1i3rc2, d1i3rd1, d1i3re1, d1i3re2, d1i3rf1, d1i3rg1, d1i3rg2, d1i3rh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag; mutant

        fragment; missing more than one-third of the common structure and/or sequence
      4. 2938490Domain d1i3rh2: 1i3r H:1-120 [61635]
        Other proteins in same PDB: d1i3ra1, d1i3ra2, d1i3rb1, d1i3rc1, d1i3rc2, d1i3rd1, d1i3re1, d1i3re2, d1i3rf1, d1i3rg1, d1i3rg2, d1i3rh1
        contains covalently bound peptides at the N-termini of chains B, D, F and H
        complexed with nag; mutant

        fragment; missing more than one-third of the common structure and/or sequence
    4. Domains for 1iea:
      1. 2938485Domain d1ieab2: 1iea B:4-92 [38206]
        Other proteins in same PDB: d1ieaa1, d1ieaa2, d1ieab1, d1ieac1, d1ieac2, d1iead1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938486Domain d1iead2: 1iea D:4-92 [38208]
        Other proteins in same PDB: d1ieaa1, d1ieaa2, d1ieab1, d1ieac1, d1ieac2, d1iead1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
    5. Domains for 1ieb:
      1. 2938494Domain d1iebb2: 1ieb B:4-92 [38210]
        Other proteins in same PDB: d1ieba1, d1ieba2, d1iebb1, d1iebc1, d1iebc2, d1iebd1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag, so4

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938495Domain d1iebd2: 1ieb D:4-92 [38212]
        Other proteins in same PDB: d1ieba1, d1ieba2, d1iebb1, d1iebc1, d1iebc2, d1iebd1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag, so4

        fragment; missing more than one-third of the common structure and/or sequence
    6. Domains for 1kt2:
      1. 2938496Domain d1kt2b2: 1kt2 B:2-120 [72954]
        Other proteins in same PDB: d1kt2a1, d1kt2a2, d1kt2b1, d1kt2c1, d1kt2c2, d1kt2d1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938497Domain d1kt2d2: 1kt2 D:2-120 [72958]
        Other proteins in same PDB: d1kt2a1, d1kt2a2, d1kt2b1, d1kt2c1, d1kt2c2, d1kt2d1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag

        fragment; missing more than one-third of the common structure and/or sequence
    7. Domains for 1ktd:
      1. 2938491Domain d1ktdb2: 1ktd B:1-120 [72967]
        Other proteins in same PDB: d1ktda1, d1ktda2, d1ktdb1, d1ktdc1, d1ktdc2, d1ktdd1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag, so4

        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938492Domain d1ktdd2: 1ktd D:1-120 [72971]
        Other proteins in same PDB: d1ktda1, d1ktda2, d1ktdb1, d1ktdc1, d1ktdc2, d1ktdd1
        contains covalently bound peptides at the N-termini of chains B and D
        complexed with nag, so4

        fragment; missing more than one-third of the common structure and/or sequence
    8. Domains for 1r5v:
      1. 2938483Domain d1r5vb2: 1r5v B:32-120 [97119]
        Other proteins in same PDB: d1r5va1, d1r5va2, d1r5vb1, d1r5vb3, d1r5vc1, d1r5vc2, d1r5vd1, d1r5vd3
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938484Domain d1r5vd2: 1r5v D:32-120 [97123]
        Other proteins in same PDB: d1r5va1, d1r5va2, d1r5vb1, d1r5vb3, d1r5vc1, d1r5vc2, d1r5vd1, d1r5vd3
        fragment; missing more than one-third of the common structure and/or sequence
    9. Domains for 1r5w:
      1. 2938498Domain d1r5wb2: 1r5w B:32-120 [97127]
        Other proteins in same PDB: d1r5wa1, d1r5wa2, d1r5wb1, d1r5wb3, d1r5wc1, d1r5wc2, d1r5wd1, d1r5wd3
        fragment; missing more than one-third of the common structure and/or sequence
      2. 2938499Domain d1r5wd2: 1r5w D:32-120 [97131]
        Other proteins in same PDB: d1r5wa1, d1r5wa2, d1r5wb1, d1r5wb3, d1r5wc1, d1r5wc2, d1r5wd1, d1r5wd3
        fragment; missing more than one-third of the common structure and/or sequence
    10. Domain for 3qib:

More info for Protein Class II MHC beta chain, N-terminal domain from d.19.1.1: MHC antigen-recognition domain

Timeline for Protein Class II MHC beta chain, N-terminal domain from d.19.1.1: MHC antigen-recognition domain:

  • Protein Class II MHC beta chain, N-terminal domain from d.19.1.1: MHC antigen-recognition domain first appeared in SCOP 1.65
  • Protein Class II MHC beta chain, N-terminal domain from d.19.1.1: MHC antigen-recognition domain appears in SCOPe 2.07