PDB entry 1aqd

View 1aqd on RCSB PDB site
Description: hla-dr1 (dra, drb1 0101) human class II histocompatibility protein (extracellular domain) complexed with endogenous peptide
Class: complex (MHC protein/antigen)
Keywords: complex (MHC protein/antigen), histocompatibility antigen
Deposited on 1997-07-28, released 1998-01-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.216
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqda1, d1aqda2
  • Chain 'B':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqdb1, d1aqdb2
  • Chain 'C':
    Compound: hla-a2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqdd1, d1aqdd2
  • Chain 'E':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqde1, d1aqde2
  • Chain 'F':
    Compound: hla-a2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqdg1, d1aqdg2
  • Chain 'H':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqdh1, d1aqdh2
  • Chain 'I':
    Compound: hla-a2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqdj1, d1aqdj2
  • Chain 'K':
    Compound: hla-dr1 class II histocompatibility protein
    Species: Homo sapiens [TaxId:9606]
    Gene: DRA*0101, DRB1*0101
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1aqdk1, d1aqdk2
  • Chain 'L':
    Compound: hla-a2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1aqdA (A:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dapsplpetten
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdA (A:)
    eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
    iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
    rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1aqdB (B:)
    gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
    gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
    tspltvewrarsesaqsk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdB (B:)
    rprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaeywns
    qkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvsgfy
    pgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtsp
    ltvewra
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1aqdD (D:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dapsplpetten
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdD (D:)
    eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
    iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
    rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwe
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1aqdE (E:)
    gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
    gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
    tspltvewrarsesaqsk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdE (E:)
    rprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaeywns
    qkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvsgfy
    pgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtsp
    ltvewra
    

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1aqdG (G:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dapsplpetten
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdG (G:)
    eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
    iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
    rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwe
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1aqdH (H:)
    gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
    gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
    tspltvewrarsesaqsk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdH (H:)
    rprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaeywns
    qkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvsgfy
    pgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtsp
    ltvewra
    

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >1aqdJ (J:)
    ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
    aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
    wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
    dapsplpetten
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdJ (J:)
    eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
    iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
    rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwe
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >1aqdK (K:)
    gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
    wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
    gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
    tspltvewrarsesaqsk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1aqdK (K:)
    rprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaeywns
    qkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvsgfy
    pgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtsp
    ltvewrar
    

  • Chain 'L':
    No sequence available.