PDB entry 3c60
View 3c60 on RCSB PDB site
Description: Crystal structure of mouse MHC class II I-Ab/3K peptide complexed with mouse TCR YAe62
Class: sugar binding protein/immune system
Keywords: TCR-pMHC complex, Glycoprotein, Immune response, Membrane, MHC II, Transmembrane, SUGAR BINDING PROTEIN-IMMUNE SYSTEM COMPLEX
Deposited on
2008-02-01, released
2008-04-29
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-02-05, with a file datestamp of
2020-01-31.
Experiment type: XRAY
Resolution: 3.05 Å
R-factor: N/A
AEROSPACI score: 0.12
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: TCR YAe62 alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c60a1, d3c60a2 - Chain 'B':
Compound: TCR YAe62 beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c60b1, d3c60b2 - Chain 'C':
Compound: H-2 class II histocompatibility antigen, A-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-Aa
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c60c1, d3c60c2 - Chain 'D':
Compound: 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)
Species: Mus musculus [TaxId:10090]
Gene: H2-Ab1, H2-iabeta
Database cross-references and differences (RAF-indexed):
- Uniprot P14483 (Start-216)
- PDB 3C6O (0-12)
Domains in SCOPe 2.08: d3c60d1, d3c60d2 - Chain 'E':
Compound: TCR YAe62 alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c60e1, d3c60e2 - Chain 'F':
Compound: TCR YAe62 beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c60f1, d3c60f2 - Chain 'G':
Compound: H-2 class II histocompatibility antigen, A-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-Aa
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c60g1, d3c60g2 - Chain 'H':
Compound: 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)
Species: Mus musculus [TaxId:10090]
Gene: H2-Ab1, H2-iabeta
Database cross-references and differences (RAF-indexed):
- Uniprot P14483 (Start-216)
- PDB 3C6O (0-12)
Domains in SCOPe 2.08: d3c60h1, d3c60h2
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3c60A (A:)
dsvtqmqgqvtlsendflfinctysttgyptlfwyvqysgegpqlllqvttannkgssrg
featydkgttsfhlqktsvqeidsavyycaansgtyqrfgtgtklqvvpniqnpdpavyq
lrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdf
acanafnnsiipedtffps
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3c60B (B:)
avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3c60C (C:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
pe
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3c60D (D:)
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewka
Sequence, based on observed residues (ATOM records): (download)
>3c60D (D:)
feaqkakankavderhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehrav
telgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislsrteal
nhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrge
vytchvehpslkspitvewka
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3c60E (E:)
dsvtqmqgqvtlsendflfinctysttgyptlfwyvqysgegpqlllqvttannkgssrg
featydkgttsfhlqktsvqeidsavyycaansgtyqrfgtgtklqvvpniqnpdpavyq
lrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdf
acanafnnsiipedtffps
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3c60F (F:)
avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeaw
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3c60G (G:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
pe
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3c60H (H:)
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewka
Sequence, based on observed residues (ATOM records): (download)
>3c60H (H:)
feaqkakankavderhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehrav
telgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislsrteal
nhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrge
vytchvehpslkspitvewka