SCOPe 2.08: Domain d3c5zd2: 3c5z D:1-120

Lineage for d3c5zd2 (3c5z D:1-120)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
   dimeric

4. Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families)

5. Family d.19.1.1: MHC antigen-recognition domain [54453] (13 proteins)

6. Protein Class II MHC beta chain, N-terminal domain [88819] (15 species)

7. Species Mouse (Mus musculus), I-AB [TaxId:10090] [88828] (6 PDB entries)

8. Domain d3c5zd2: 3c5z D:1-120 [155956]
   Other proteins in same PDB: d3c5za1, d3c5za2, d3c5zb1, d3c5zb2, d3c5zc1, d3c5zc2, d3c5zd1, d3c5ze1, d3c5ze2, d3c5zf1, d3c5zf2, d3c5zg1, d3c5zg2, d3c5zh1
   automated match to d1lnub2
   fragment; missing more than one-third of the common structure and/or sequence

Details for d3c5zd2

PDB Entry: 3c5z, 2.55 Å

PDB Description: crystal structure of mouse mhc class ii i-ab/3k peptide complexed with mouse tcr b3k506

PDB Compounds: (D:) 3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)

SCOPe Domain Sequences for d3c5zd2:

Sequence, based on SEQRES records:

>d3c5zd2 d.19.1.1 (D:1-120) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-AB [TaxId: 10090]}
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr

Sequence, based on observed residues (ATOM records):

>d3c5zd2 d.19.1.1 (D:1-120) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-AB [TaxId: 10090]}
feaqkakankavdgerhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehra
vtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr

Timeline for d3c5zd2:

• d3c5zd2 first appeared in SCOP 1.75
  
• d3c5zd2 appears in SCOPe 2.07