PDB entry 1ktd

View 1ktd on RCSB PDB site
Description: crystal structure of class II MHC molecule iek bound to pigeon cytochrome c peptide
Class: immune system
Keywords: Protein-peptide complex, T cell receptor, antigen presentation, cytochrome, IMMUNE SYSTEM
Deposited on 2002-01-15, released 2002-05-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class II histocompatibility antigen, E-D alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Ea
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ktda1, d1ktda2
  • Chain 'B':
    Compound: Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k
    Species: , [TaxId:10090]
    Gene: H2-Eb1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00021 (0-13)
      • conflict (0)
      • engineered mutation (11)
      • linker (14-28)
    • Uniprot Q31163 (29-214)
    Domains in SCOPe 2.08: d1ktdb1, d1ktdb2
  • Chain 'C':
    Compound: H-2 class II histocompatibility antigen, E-D alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Ea
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1ktdc1, d1ktdc2
  • Chain 'D':
    Compound: Fusion protein consisting of cytochrome C peptide, glycine rich linker, and MHC E-beta-k
    Species: , [TaxId:10090]
    Gene: H2-Eb1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00021 (0-13)
      • conflict (0)
      • engineered mutation (11)
      • linker (14-28)
    • Uniprot Q31163 (29-214)
    Domains in SCOPe 2.08: d1ktdd1, d1ktdd2
  • Heterogens: NAG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ktdA (A:)
ikeehtiiqaefyllpdkrgefmfdfdgdeifhvdieksetiwrleefakfasfeaqgal
aniavdkanldvmkersnntpdanvapevtvlsrspvnlgepnilicfidkfsppvvnvt
wlrngrpvtegvsetvflprddhlfrkfhyltflpstddfydcevdhwgleeplrktwef
ee

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ktdB (B:)
aadliaylkqasakggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfyn
leenlrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifdnflvpr
rveptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeektgivstglvrngdw
tfqtlvmletvpqsgevytcqvehpsltdpvtvew

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ktdC (C:)
ikeehtiiqaefyllpdkrgefmfdfdgdeifhvdieksetiwrleefakfasfeaqgal
aniavdkanldvmkersnntpdanvapevtvlsrspvnlgepnilicfidkfsppvvnvt
wlrngrpvtegvsetvflprddhlfrkfhyltflpstddfydcevdhwgleeplrktwef
ee

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ktdD (D:)
aadliaylkqasakggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfyn
leenlrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifdnflvpr
rveptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeektgivstglvrngdw
tfqtlvmletvpqsgevytcqvehpsltdpvtvew