PDB entry 3c6l
View 3c6l on RCSB PDB site
Description: Crystal structure of mouse MHC class II I-Ab/3K peptide complexed with mouse TCR 2W20
Class: sugar binding protein/immune system
Keywords: TCR-pMHC complex, Glycoprotein, Immune response, Membrane, MHC II, Transmembrane, SUGAR BINDING PROTEIN-IMMUNE SYSTEM COMPLEX
Deposited on
2008-02-04, released
2008-04-29
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.08
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: TCR 2W20 alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c6la1, d3c6la2 - Chain 'B':
Compound: TCR 2W20 beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: H-2 class II histocompatibility antigen, A-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-Aa
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c6lc1, d3c6lc2 - Chain 'D':
Compound: 3K peptide, Linker,and H-2 class II histocompatibility antigen (A beta chain)
Species: Mus musculus [TaxId:10090]
Gene: H2-Ab1, H2-iabeta
Database cross-references and differences (RAF-indexed):
- Uniprot P14483 (Start-216)
- PDB 3C6L (0-End)
Domains in SCOPe 2.08: d3c6ld1, d3c6ld2 - Chain 'E':
Compound: TCR 2W20 alpha chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c6le1, d3c6le2 - Chain 'F':
Compound: TCR 2W20 beta chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: H-2 class II histocompatibility antigen, A-B alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-Aa
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3c6lg1, d3c6lg2 - Chain 'H':
Compound: 3K peptide, Linker,and H-2 class II histocompatibility antigen (A beta chain)
Species: Mus musculus [TaxId:10090]
Gene: H2-Ab1, H2-iabeta
Database cross-references and differences (RAF-indexed):
- Uniprot P14483 (Start-216)
- PDB 3C6L (0-End)
Domains in SCOPe 2.08: d3c6lh1, d3c6lh2 - Heterogens: CA
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3c6lA (A:)
qqvrqspqsltvwegetailncsyedstfdyfpwyhqfpgespalliairpvsnkkedgr
ftiffnkrekkfslhiadsqpgdsatyfcaasdnriffgdgtqlvvkpniqnpepavyql
kdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiawsnqtsft
cqdif
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3c6lC (C:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
pe
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3c6lD (D:)
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewka
Sequence, based on observed residues (ATOM records): (download)
>3c6lD (D:)
feaqkakankavrhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehravte
lgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislshntlvcs
vtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrgevytchvehp
slkspitvewka
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3c6lE (E:)
qqvrqspqsltvwegetailncsyedstfdyfpwyhqfpgespalliairpvsnkkedgr
ftiffnkrekkfslhiadsqpgdsatyfcaasdnriffgdgtqlvvkpniqnpepavyql
kdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiawsnqtsft
cqdif
Sequence, based on observed residues (ATOM records): (download)
>3c6lE (E:)
qqvrqspqsltvwegetailncsyedstfdyfpwyhqfpgespalliairpvsnkkedgr
ftiffnkrekkfslhiadsqpgdsatyfcaasdnriffgdgtqlvvkpniqnpepavyql
kdprsqdstlclftdfdsqinvpktmesgtfitdktvldmkamdsksngaiawsnqtsft
cqdi
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3c6lG (G:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
pe
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3c6lH (H:)
feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewka
Sequence, based on observed residues (ATOM records): (download)
>3c6lH (H:)
feaqkakankavrhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehravte
lgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislshntlvcs
vtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrgevytchvehp
slkspitvewka