Lineage for d1s9ve1 (1s9v E:95-190)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2017116Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2020524Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 protein domains)
  6. 2022117Protein Class II MHC beta chain, C-terminal domain [88625] (6 species)
  7. 2022120Species Human (Homo sapiens), HLA-DQ group [TaxId:9606] [88630] (3 PDB entries)
    probably orthologous to the mouse I-A group
  8. 2022123Domain d1s9ve1: 1s9v E:95-190 [98766]
    Other proteins in same PDB: d1s9va1, d1s9va2, d1s9vb2, d1s9vd1, d1s9vd2, d1s9ve2
    complexed with deamidated gliadin peptide
    complexed with edo

Details for d1s9ve1

PDB Entry: 1s9v (more details), 2.22 Å

PDB Description: Crystal structure of HLA-DQ2 complexed with deamidated gliadin peptide
PDB Compounds: (E:) HLA class II histocompatibility antigen, DQ(1) beta chain

SCOPe Domain Sequences for d1s9ve1:

Sequence, based on SEQRES records: (download)

>d1s9ve1 b.1.1.2 (E:95-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}
veptvtispsrtealnhhnllvcsvtdfypaqikvrwfrndqeetagvvstplirngdwt
fqilvmlemtpqrgdvytchvehpslqspitvewra

Sequence, based on observed residues (ATOM records): (download)

>d1s9ve1 b.1.1.2 (E:95-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}
veptvtispsnllvcsvtdfypaqikvrwfrndqeetagvvstplirngdwtfqilvmle
mtpqrgdvytchvehpslqspitvewra

SCOPe Domain Coordinates for d1s9ve1:

Click to download the PDB-style file with coordinates for d1s9ve1.
(The format of our PDB-style files is described here.)

Timeline for d1s9ve1: