PDB entry 2oje
View 2oje on RCSB PDB site
Description: Mycoplasma arthritidis-derived mitogen complexed with class II MHC molecule HLA-DR1/HA complex in the presence of EDTA
Class: immune system
Keywords: superantigen, MHC, IMMUNE SYSTEM
Deposited on
2007-01-12, released
2007-01-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.211
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class II histocompatibility antigen, DR alpha chain precursor
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01903 (0-179)
- modified residue (21)
- modified residue (34)
- modified residue (71)
Domains in SCOPe 2.08: d2ojea1, d2ojea2 - Chain 'B':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain precursor
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2ojeb1, d2ojeb2 - Chain 'C':
Compound: haemagglutinin peptide 306-318
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Superantigen
Species: Mycoplasma arthritidis [TaxId:2111]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2ojed1 - Chain 'E':
Compound: HLA class II histocompatibility antigen, DR alpha chain precursor
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P01903 (0-179)
- modified residue (21)
- modified residue (34)
- modified residue (71)
Domains in SCOPe 2.08: d2ojee1, d2ojee2 - Chain 'F':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain precursor
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2ojef1, d2ojef2 - Chain 'G':
Compound: haemagglutinin peptide 306-318
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Superantigen
Species: Mycoplasma arthritidis [TaxId:2111]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2ojeh1 - Heterogens: PO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>2ojeA (A:)
keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>2ojeB (B:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>2ojeD (D:)
smklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyrha
fgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadndls
yfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelwwf
rsllvkgvylikryyegdielkttsdfakavfed
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>2ojeE (E:)
keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>2ojeF (F:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>2ojeH (H:)
smklrvenpkkaqkhfvqnlnnvvftnkelediynlsnkeetkevlklfklkvnqfyrha
fgivndynglleykeifnmmflklsvvfdtqrkeannveqikrniaildeimakadndls
yfisqnknfqelwdkavkltkemkiklkgqkldlrdgevainkvrelfgsdknvkelwwf
rsllvkgvylikryyegdielkttsdfakavfed