Lineage for d2ipkd2 (2ipk D:122-239)

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. Superfamily d.15.6: Superantigen toxins, C-terminal domain [54334] (2 families) (S)
  5. Family d.15.6.1: Superantigen toxins, C-terminal domain [54335] (16 proteins)
  6. Protein Staphylococcal enterotoxin C3, SEC3 [54344] (1 species)
  7. Species Staphylococcus aureus [TaxId:1280] [54345] (20 PDB entries)
    Uniprot P23313
  8. Domain d2ipkd2: 2ipk D:122-239 [137582]
    Other proteins in same PDB: d2ipka1, d2ipka2, d2ipkb1, d2ipkb2, d2ipkd1
    automatically matched to d1jwmd2

Details for d2ipkd2

PDB Entry: 2ipk (more details), 2.3 Å

PDB Description: crystal structure of the mhc class ii molecule hla-dr1 in complex with the fluorogenic peptide, acpkxvkqntlklat (x=3-[5-(dimethylamino)-1,3- dioxo-1,3-dihydro-2h-isoindol-2-yl]-l-alanine) and the superantigen, sec3 variant 3b2
PDB Compounds: (D:) Enterotoxin type C-3

SCOPe Domain Sequences for d2ipkd2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2ipkd2 d.15.6.1 (D:122-239) Staphylococcal enterotoxin C3, SEC3 {Staphylococcus aureus [TaxId: 1280]}
hfdngnlqnvlvrvyenkrntisfevqtdkksvtaqeldikarnflinkknlyefnsspy
etgyikfienngntfwydmmpapgdkfdqskylmmyndnktvdsksvkievhlttkng

SCOPe Domain Coordinates for d2ipkd2 are not available.

Timeline for d2ipkd2:

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Domains from same chain:
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d2ipkd1
View in 3D
Domains from other chains:
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d2ipka1, d2ipka2, d2ipkb1, d2ipkb2