Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2006336Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2006337Superfamily a.118.1: ARM repeat [48371] (26 families) (S)
  5. 2006908Family a.118.1.0: automated matches [191340] (1 protein)
    not a true family
  6. 2006909Protein automated matches [190220] (14 species)
    not a true protein

Species:

  1. 2006910African clawed frog (Xenopus laevis) [TaxId:8355] [256268] (1 PDB entry)
  2. 2006913Bacillus cereus [TaxId:1396] [188492] (1 PDB entry)
  3. 2006915Bacillus cereus [TaxId:222523] [189468] (4 PDB entries)
    1. Domain for 3jx7:
    2. Domain for 3jxy:
    3. Domain for 3jxz:
    4. Domain for 3jy1:
  4. 2006920Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186980] (6 PDB entries)
    1. Domain for 2bku:
    2. Domain for 2bpt:
    3. Domain for 3bwt:
    4. Domains for 3bx2:
      1. 2006927Domain d3bx2a_: 3bx2 A: [239169]
        automated match to d3bx2b_
        protein/RNA complex; complexed with na, so4
      2. 2006928Domain d3bx2b_: 3bx2 B: [231868]
        automated match to d3q0mb_
        protein/RNA complex; complexed with na, so4
    5. Domains for 3bx3:
      1. 2006929Domain d3bx3a_: 3bx3 A: [245396]
        automated match to d3q0mb_
        protein/RNA complex; complexed with so4; mutant
      2. 2006930Domain d3bx3b_: 3bx3 B: [245397]
        automated match to d3q0mb_
        protein/RNA complex; complexed with so4; mutant
    6. Domains for 3k49:
      1. 2006922Domain d3k49a_: 3k49 A: [179062]
        automated match to d1m8wb_
        protein/RNA complex; complexed with cit
      2. 2006923Domain d3k49c_: 3k49 C: [179063]
        automated match to d1m8wb_
        protein/RNA complex; complexed with cit
      3. 2006924Domain d3k49e_: 3k49 E: [179064]
        automated match to d1m8wb_
        protein/RNA complex; complexed with cit
  5. 2006931Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256146] (2 PDB entries)
    1. Domain for 3vyc:
    2. Domain for 4xzr:
  6. 2006934Human (Homo sapiens) [TaxId:9606] [189070] (40 PDB entries)
    1. Domains for 2jdq:
      1. 2006943Domain d2jdqa_: 2jdq A: [230912]
        Other proteins in same PDB: d2jdqd_, d2jdqe_
        automated match to d3tj3a_
        protein/RNA complex
      2. 2006944Domain d2jdqb_: 2jdq B: [238701]
        Other proteins in same PDB: d2jdqd_, d2jdqe_
        automated match to d2jdqa_
        protein/RNA complex
    2. Domain for 2xzg:
    3. Domain for 2xzh:
    4. Domain for 3dbs:
    5. Domain for 3fey:
    6. Domain for 3jui:
    7. Domain for 3l6x:
    8. Domains for 3l6y:
      1. 2006962Domain d3l6yc_: 3l6y C: [247362]
        automated match to d1xm9a1
      2. 2006963Domain d3l6ye_: 3l6y E: [247363]
        automated match to d1xm9a1
    9. Domains for 3mdj:
      1. 2006952Domain d3mdja4: 3mdj A:615-934 [247647]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3
        automated match to d2yd0a4
        complexed with bes, nag, zn
      2. 2006953Domain d3mdjb4: 3mdj B:615-934 [247651]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3
        automated match to d2yd0a4
        complexed with bes, nag, zn
      3. 2006954Domain d3mdjc4: 3mdj C:615-934 [247655]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3
        automated match to d2yd0a4
        complexed with bes, nag, zn
    10. Domains for 3qnf:
      1. 2006960Domain d3qnfb4: 3qnf B:615-935 [248937]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfa3, d3qnfb1, d3qnfb2, d3qnfb3, d3qnfc1, d3qnfc2, d3qnfc3
        automated match to d2yd0a4
        complexed with nag, zn
      2. 2006961Domain d3qnfc4: 3qnf C:615-937 [248941]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfa3, d3qnfb1, d3qnfb2, d3qnfb3, d3qnfc1, d3qnfc2, d3qnfc3
        automated match to d2yd0a4
        complexed with nag, zn
    11. Domains for 3se6:
      1. 2006967Domain d3se6a4: 3se6 A:638-960 [249388]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a3, d3se6a5, d3se6b1, d3se6b2, d3se6b3, d3se6b5
        automated match to d2yd0a4
        complexed with lys, mes, nag, zn
      2. 2006968Domain d3se6b4: 3se6 B:638-960 [249392]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a3, d3se6a5, d3se6b1, d3se6b2, d3se6b3, d3se6b5
        automated match to d2yd0a4
        complexed with lys, mes, nag, zn
    12. Domains for 3tj3:
      1. 2006964Domain d3tj3a_: 3tj3 A: [216835]
        automated match to d1ee5a_
      2. 2006965Domain d3tj3b_: 3tj3 B: [216836]
        automated match to d1ee5a_
    13. Domain for 3zvv:
    14. Domain for 3zw3:
    15. Domain for 4anu:
    16. Domain for 4anv:
    17. Domain for 4anw:
    18. Domain for 4anx:
    19. Domain for 4fyq:
    20. Domain for 4fyr:
    21. Domain for 4fyt:
    22. Domain for 4g55:
    23. Domain for 4hle:
    24. Domain for 4j6i:
    25. Domains for 4jbs:
      1. 2006971Domain d4jbsa4: 4jbs A:638-960 [252875]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa3, d4jbsa5, d4jbsb1, d4jbsb2, d4jbsb3, d4jbsb5
        automated match to d2yd0a4
        complexed with imd, nag, p52, zn
      2. 2006972Domain d4jbsb4: 4jbs B:638-960 [252879]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa3, d4jbsa5, d4jbsb1, d4jbsb2, d4jbsb3, d4jbsb5
        automated match to d2yd0a4
        complexed with imd, nag, p52, zn
    26. Domains for 4p8q:
      1. 2006973Domain d4p8qa4: 4p8q A:707-1025 [261384]
        Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa3, d4p8qb1, d4p8qb2, d4p8qb3
        automated match to d3se6b4
        complexed with nag, unl, zn
      2. 2006974Domain d4p8qb4: 4p8q B:707-1025 [263459]
        Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa3, d4p8qb1, d4p8qb2, d4p8qb3
        automated match to d4p8qa4
        complexed with nag, unl, zn
    27. Domains for 4pj6:
      1. 2006969Domain d4pj6a4: 4pj6 A:707-1025 [267177]
        Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a3, d4pj6b1, d4pj6b2, d4pj6b3
        automated match to d4p8qa4
        complexed with lys, nag, zn
      2. 2006970Domain d4pj6b4: 4pj6 B:707-1025 [267181]
        Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a3, d4pj6b1, d4pj6b2, d4pj6b3
        automated match to d4p8qa4
        complexed with lys, nag, zn
    28. Domain for 4uad:
    29. Domain for 4uae:
    30. Domain for 4urk:
    31. Domain for 5aen:
    32. Domains for 5cu5:
      1. 2006976Domain d5cu5a4: 5cu5 A:638-960 [277109]
        Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a3, d5cu5a5, d5cu5b1, d5cu5b2, d5cu5b3, d5cu5b5
        automated match to d3se6a4
        complexed with man, nag
      2. 2006977Domain d5cu5b4: 5cu5 B:638-960 [277114]
        Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a3, d5cu5a5, d5cu5b1, d5cu5b2, d5cu5b3, d5cu5b5
        automated match to d3se6a4
        complexed with man, nag
    33. Domain for 5fwq:
    34. Domain for 5g2n:
    35. Domain for 5g55:
    36. Domains for 5j6s:
      1. 2287721Domain d5j6sb4: 5j6s B:638-960 [331022]
        Other proteins in same PDB: d5j6sa1, d5j6sa2, d5j6sa3, d5j6sa5, d5j6sb1, d5j6sb2, d5j6sb3, d5j6sb5
        automated match to d3se6a4
        complexed with 6ga, bma, man, nag, zn
      2. 2287733Domain d5j6sa4: 5j6s A:638-960 [331034]
        Other proteins in same PDB: d5j6sa1, d5j6sa2, d5j6sa3, d5j6sa5, d5j6sb1, d5j6sb2, d5j6sb3, d5j6sb5
        automated match to d3se6a4
        complexed with 6ga, bma, man, nag, zn
    37. Domains for 5k1v:
      1. 2289059Domain d5k1vb3: 5k1v B:638-960 [332360]
        Other proteins in same PDB: d5k1va1, d5k1va2, d5k1va3, d5k1va5, d5k1vb1, d5k1vb2
        automated match to d3se6a4
        complexed with 6px, man, nag, zn
      2. 2289089Domain d5k1va4: 5k1v A:638-960 [332390]
        Other proteins in same PDB: d5k1va1, d5k1va2, d5k1va3, d5k1va5, d5k1vb1, d5k1vb2
        automated match to d3se6a4
        complexed with 6px, man, nag, zn
    38. Domains for 5lhd:
      1. 2289287Domain d5lhdc4: 5lhd C:637-967 [332588]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda3, d5lhdb1, d5lhdb2, d5lhdb3, d5lhdc1, d5lhdc2, d5lhdc3, d5lhdd1, d5lhdd2, d5lhdd3
        automated match to d4fyta4
        complexed with bma, edo, nag, zn
      2. 2289313Domain d5lhdd4: 5lhd D:637-967 [332614]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda3, d5lhdb1, d5lhdb2, d5lhdb3, d5lhdc1, d5lhdc2, d5lhdc3, d5lhdd1, d5lhdd2, d5lhdd3
        automated match to d4fyta4
        complexed with bma, edo, nag, zn
      3. 2289373Domain d5lhdb4: 5lhd B:637-967 [332674]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda3, d5lhdb1, d5lhdb2, d5lhdb3, d5lhdc1, d5lhdc2, d5lhdc3, d5lhdd1, d5lhdd2, d5lhdd3
        automated match to d4fyta4
        complexed with bma, edo, nag, zn
      4. 2289386Domain d5lhda4: 5lhd A:637-967 [332687]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda3, d5lhdb1, d5lhdb2, d5lhdb3, d5lhdc1, d5lhdc2, d5lhdc3, d5lhdd1, d5lhdd2, d5lhdd3
        automated match to d4fyta4
        complexed with bma, edo, nag, zn
    39. Domains for 5mj6:
      1. 2289404Domain d5mj6a4: 5mj6 A:707-1025 [332705]
        Other proteins in same PDB: d5mj6a1, d5mj6a2, d5mj6a3, d5mj6a5, d5mj6b1, d5mj6b2, d5mj6b3, d5mj6b5
        automated match to d4pj6a4
        complexed with 7o2, bma, br, man, nag, zn
      2. 2289432Domain d5mj6b4: 5mj6 B:707-1025 [332733]
        Other proteins in same PDB: d5mj6a1, d5mj6a2, d5mj6a3, d5mj6a5, d5mj6b1, d5mj6b2, d5mj6b3, d5mj6b5
        automated match to d4pj6a4
        complexed with 7o2, bma, br, man, nag, zn
    40. Domain for 5xzx:
  7. 2006978Mouse (Mus musculus) [TaxId:10090] [272712] (5 PDB entries)
    1. Domain for 4u54:
    2. Domain for 4zdu:
    3. Domain for 5fc8:
    4. Domain for 5k9s:
    5. Domain for 5svz:
  8. 2006981Neisseria meningitidis [TaxId:122586] [259505] (1 PDB entry)
  9. 2006983Nematode (Caenorhabditis elegans) [TaxId:6239] [271944] (2 PDB entries)
    1. Domain for 4r10:
    2. Domains for 4r11:
      1. 2006985Domain d4r11a_: 4r11 A: [271945]
        automated match to d1g3ja_
        complexed with iod
      2. 2006986Domain d4r11c_: 4r11 C: [271946]
        automated match to d1g3ja_
        complexed with iod
      3. 2006987Domain d4r11e_: 4r11 E: [271947]
        automated match to d1g3ja_
        complexed with iod
  10. 2006988Oryza sativa [TaxId:39947] [226552] (2 PDB entries)
    1. Domain for 4b8j:
    2. Domain for 4b8o:
  11. 2006991Pig (Sus scrofa) [TaxId:9823] [311380] (11 PDB entries)
    1. Domain for 4fke:
    2. Domain for 4fkh:
    3. Domain for 4fkk:
    4. Domain for 4h5h:
    5. Domain for 4hol:
    6. Domain for 4hom:
    7. Domain for 4naq:
    8. Domain for 4nz8:
    9. Domain for 4ou3:
    10. Domains for 5lds:
      1. 2289275Domain d5ldsd4: 5lds D:634-963 [332576]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa3, d5ldsb1, d5ldsb2, d5ldsb3, d5ldsc1, d5ldsc2, d5ldsc3, d5ldsd1, d5ldsd2, d5ldsd3
        automated match to d4fkha4
        complexed with act, bma, nag, zn
      2. 2289281Domain d5ldsc4: 5lds C:634-963 [332582]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa3, d5ldsb1, d5ldsb2, d5ldsb3, d5ldsc1, d5ldsc2, d5ldsc3, d5ldsd1, d5ldsd2, d5ldsd3
        automated match to d4fkha4
        complexed with act, bma, nag, zn
      3. 2289344Domain d5ldsa4: 5lds A:634-963 [332645]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa3, d5ldsb1, d5ldsb2, d5ldsb3, d5ldsc1, d5ldsc2, d5ldsc3, d5ldsd1, d5ldsd2, d5ldsd3
        automated match to d4fkha4
        complexed with act, bma, nag, zn
      4. 2289575Domain d5ldsb4: 5lds B:634-963 [332876]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa3, d5ldsb1, d5ldsb2, d5ldsb3, d5ldsc1, d5ldsc2, d5ldsc3, d5ldsd1, d5ldsd2, d5ldsd3
        automated match to d4fkha4
        complexed with act, bma, nag, zn
    11. Domains for 5lg6:
      1. 2289618Domain d5lg6a4: 5lg6 A:634-963 [332919]
        Other proteins in same PDB: d5lg6a1, d5lg6a2, d5lg6a3, d5lg6b1, d5lg6b2, d5lg6b3
        automated match to d4fkha4
        complexed with nag, zn
      2. 2289839Domain d5lg6b4: 5lg6 B:634-963 [333140]
        Other proteins in same PDB: d5lg6a1, d5lg6a2, d5lg6a3, d5lg6b1, d5lg6b2, d5lg6b3
        automated match to d4fkha4
        complexed with nag, zn
  12. 2007001Rice (Oryza sativa) [TaxId:4530] [256208] (2 PDB entries)
    1. Domain for 4bpl:
    2. Domains for 4bqk:
      1. 2007002Domain d4bqka1: 4bqk A:73-494 [251302]
        Other proteins in same PDB: d4bqka2
        automated match to d1y2ac_
        complexed with peg
      2. 2007003Domain d4bqkb_: 4bqk B: [251303]
        Other proteins in same PDB: d4bqka2
        automated match to d1y2ac_
        complexed with peg
  13. 2007005Thermoplasma acidophilum [TaxId:273075] [256035] (1 PDB entry)
  14. 2268628Chaetomium thermophilum [TaxId:759272] [311934] (1 PDB entry)

More info for Protein automated matches from a.118.1.0: automated matches

Timeline for Protein automated matches from a.118.1.0: automated matches: