PDB entry 2jdq

View 2jdq on RCSB PDB site
Description: C-terminal domain of influenza A virus polymerase PB2 subunit in complex with human importin alpha5
Class: protein transport
Keywords: transport, pb2 subunit, nuclear protein, protein transport, armadillo repeats, influenza a virus RNA-dependent RNA polymerase, bipartite nuclear localisation signal, nuclear import adapter, human importin alpha5, host-virus interaction
Deposited on 2007-01-11, released 2007-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-09, with a file datestamp of 2019-10-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: importin alpha-1 subunit
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdqa_
  • Chain 'B':
    Compound: importin alpha-1 subunit
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdqb_
  • Chain 'D':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdqd_
  • Chain 'E':
    Compound: Polymerase basic protein 2
    Species: INFLUENZA A VIRUS [TaxId:11320]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2jdqe_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2jdqA (A:)
gamgfheaqinnmemapggvitsdmiemifskspeqqlsatqkfrkllskepnppidevi
stpgvvarfveflkrkenctlqfesawvltniasgnslqtriviqagavpifiellssef
edvqeqavwalgniagdstmcrdyvldcnilppllqlfskqnrltmtrnavwalsnlcrg
kspppefakvspclnvlswllfvsdtdvladacwalsylsdgpndkiqavidagvcrrlv
ellmhndykvvspalravgnivtgddiqtqvilncsalqsllhllsspkesikkeacwti
snitagnraqiqtvidanifpalisilqtaefrtrkeaawaitnatsggsaeqikylvel
gcikplcdlltvmdskivqvalnglenilrlgeqeakrngtginpycalieeaygldkie
flqshenqeiyqkafdliehyfgtededss

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdqA (A:)
tsdmiemifskspeqqlsatqkfrkllskepnppidevistpgvvarfveflkrkenctl
qfesawvltniasgnslqtriviqagavpifiellssefedvqeqavwalgniagdstmc
rdyvldcnilppllqlfskqnrltmtrnavwalsnlcrgkspppefakvspclnvlswll
fvsdtdvladacwalsylsdgpndkiqavidagvcrrlvellmhndykvvspalravgni
vtgddiqtqvilncsalqsllhllsspkesikkeacwtisnitagnraqiqtvidanifp
alisilqtaefrtrkeaawaitnatsggsaeqikylvelgcikplcdlltvmdskivqva
lnglenilrlgeqeakrngtginpycalieeaygldkieflqshenqeiyqkafdliehy
fgte

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2jdqB (B:)
gamgfheaqinnmemapggvitsdmiemifskspeqqlsatqkfrkllskepnppidevi
stpgvvarfveflkrkenctlqfesawvltniasgnslqtriviqagavpifiellssef
edvqeqavwalgniagdstmcrdyvldcnilppllqlfskqnrltmtrnavwalsnlcrg
kspppefakvspclnvlswllfvsdtdvladacwalsylsdgpndkiqavidagvcrrlv
ellmhndykvvspalravgnivtgddiqtqvilncsalqsllhllsspkesikkeacwti
snitagnraqiqtvidanifpalisilqtaefrtrkeaawaitnatsggsaeqikylvel
gcikplcdlltvmdskivqvalnglenilrlgeqeakrngtginpycalieeaygldkie
flqshenqeiyqkafdliehyfgtededss

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdqB (B:)
tsdmiemifskspeqqlsatqkfrkllskepnppidevistpgvvarfveflkrkenctl
qfesawvltniasgnslqtriviqagavpifiellssefedvqeqavwalgniagdstmc
rdyvldcnilppllqlfskqnrltmtrnavwalsnlcrgkspppefakvspclnvlswll
fvsdtdvladacwalsylsdgpndkiqavidagvcrrlvellmhndykvvspalravgni
vtgddiqtqvilncsalqsllhllsspkesikkeacwtisnitagnraqiqtvidanifp
alisilqtaefrtrkeaawaitnatsggsaeqikylvelgcikplcdlltvmdskivqva
lnglenilrlgeqeakrngtginpycalieeaygldkieflqshenqeiyqkafdliehy
fgtede

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2jdqD (D:)
gdpdestsgvesavlrgflilgkedrrygpalsinelsnlakgekanvligqgdvvlvmk
rkrdssiltdsqtatkrirmain

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdqD (D:)
savlrgflilgkedrrygpalsinelsnlakgekanvligqgdvvlvmkrkrdsqtatkr
irm

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2jdqE (E:)
gdpdestsgvesavlrgflilgkedrrygpalsinelsnlakgekanvligqgdvvlvmk
rkrdssiltdsqtatkrirmain

    Sequence, based on observed residues (ATOM records): (download) 
    >2jdqE (E:)
vesavlrgflilgkedrrygpalsinelsnlakgekanvligqgdvvlvmkrkrdstatk
rirma