Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2154577Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2154578Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2155423Family d.3.1.0: automated matches [191342] (1 protein)
    not a true family
  6. 2155424Protein automated matches [190230] (20 species)
    not a true protein

Species:

  1. 2155425Blood fluke (Schistosoma mansoni) [TaxId:6183] [189710] (4 PDB entries)
    1. Domain for 3qsd:
    2. Domain for 3s3q:
    3. Domains for 3s3r:
      1. 2155429Domain d3s3ra_: 3s3r A: [185257]
        automated match to d1qdqa_
        complexed with 0iw
      2. 2155430Domain d3s3rb_: 3s3r B: [185258]
        automated match to d1qdqa_
        complexed with 0iw
      3. 2155431Domain d3s3rc_: 3s3r C: [185259]
        automated match to d1qdqa_
        complexed with 0iw
    4. Domain for 4i07:
  2. 2155432Crocus sativus [TaxId:82528] [189777] (1 PDB entry)
  3. 2155434Dionaea muscipula [TaxId:4362] [279768] (1 PDB entry)
  4. 2155436Fasciola hepatica [TaxId:6192] [188299] (1 PDB entry)
  5. 2155438Human (Homo sapiens) [TaxId:9606] [187072] (42 PDB entries)
    1. Domain for 1dkv:
    2. Domain for 2etl:
    3. Domain for 2nqd:
    4. Domain for 2xu3:
    5. Domain for 2xu4:
    6. Domain for 2xu5:
    7. Domains for 2y5b:
      1. 2155486Domain d2y5ba_: 2y5b A: [170606]
        Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
        automated match to d2ibia1
        complexed with so4, zn
      2. 2155487Domain d2y5be_: 2y5b E: [170607]
        Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
        automated match to d2ibia1
        complexed with so4, zn
    8. Domain for 2yj2:
    9. Domain for 2yj8:
    10. Domain for 2yj9:
    11. Domain for 2yjb:
    12. Domain for 2yjc:
    13. Domain for 2zfy:
    14. Domain for 3a7s:
    15. Domains for 3bc3:
      1. 2155463Domain d3bc3a_: 3bc3 A: [231838]
        automated match to d2xu3a_
        complexed with opt
      2. 2155464Domain d3bc3b_: 3bc3 B: [231837]
        automated match to d2xu3a_
        complexed with opt
    16. Domains for 3h89:
      1. 2155490Domain d3h89a_: 3h89 A: [232420]
        automated match to d2xu3a_
        complexed with nsx
      2. 2155491Domain d3h89b_: 3h89 B: [232422]
        automated match to d2xu3a_
        complexed with nsx
      3. 2155492Domain d3h89c_: 3h89 C: [232424]
        automated match to d2xu3a_
        complexed with nsx
      4. 2155493Domain d3h89d_: 3h89 D: [232425]
        automated match to d2xu3a_
        complexed with nsx
      5. 2155494Domain d3h89e_: 3h89 E: [232421]
        automated match to d2xu3a_
        complexed with nsx
      6. 2155495Domain d3h89f_: 3h89 F: [232423]
        automated match to d2xu3a_
        complexed with nsx
    17. Domains for 3h8b:
      1. 2155451Domain d3h8ba_: 3h8b A: [232426]
        automated match to d2xu3a_
        complexed with nsy
      2. 2155452Domain d3h8bb_: 3h8b B: [232427]
        automated match to d2xu3a_
        complexed with nsy
      3. 2155453Domain d3h8bc_: 3h8b C: [232429]
        automated match to d2xu3a_
        complexed with nsy
      4. 2155454Domain d3h8bd_: 3h8b D: [232428]
        automated match to d2xu3a_
        complexed with nsy
      5. 2155455Domain d3h8be_: 3h8b E: [232431]
        automated match to d2xu3a_
        complexed with nsy
      6. 2155456Domain d3h8bf_: 3h8b F: [232430]
        automated match to d2xu3a_
        complexed with nsy
    18. Domains for 3h8c:
      1. 2155496Domain d3h8ca_: 3h8c A: [232432]
        automated match to d2xu3a_
        complexed with nsz
      2. 2155497Domain d3h8cb_: 3h8c B: [232433]
        automated match to d2xu3a_
        complexed with nsz
    19. Domains for 3i3t:
      1. 2155472Domain d3i3ta_: 3i3t A: [178066]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      2. 2155473Domain d3i3tc_: 3i3t C: [178068]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      3. 2155474Domain d3i3te_: 3i3t E: [178070]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      4. 2155475Domain d3i3tg_: 3i3t G: [178072]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
    20. Domains for 3iv2:
      1. 2155460Domain d3iv2a_: 3iv2 A: [232636]
        automated match to d2xu4a_
        complexed with gol, na, nag, so4; mutant
      2. 2155461Domain d3iv2b_: 3iv2 B: [232635]
        automated match to d2xu4a_
        complexed with gol, na, nag, so4; mutant
    21. Domains for 3mtn:
      1. 2155488Domain d3mtna_: 3mtn A: [181546]
        Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2
        automated match to d2ibia1
        complexed with cl, gol, zn
      2. 2155489Domain d3mtnc_: 3mtn C: [181548]
        Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2
        automated match to d2ibia1
        complexed with cl, gol, zn
    22. Domain for 3of8:
    23. Domain for 3of9:
    24. Domains for 3rii:
      1. 2155457Domain d3riia_: 3rii A: [184984]
        automated match to d1ucha_
        complexed with edo, mg
      2. 2155458Domain d3riib_: 3rii B: [184985]
        automated match to d1ucha_
        complexed with edo, mg
    25. Domains for 3ris:
      1. 2155482Domain d3risa_: 3ris A: [184990]
        automated match to d1ucha_
        complexed with gol, so4
      2. 2155483Domain d3risb_: 3ris B: [184991]
        automated match to d1ucha_
        complexed with gol, so4
      3. 2155484Domain d3risc_: 3ris C: [184992]
        automated match to d1ucha_
        complexed with gol, so4
      4. 2155485Domain d3risd_: 3ris D: [184993]
        automated match to d1ucha_
        complexed with gol, so4
    26. Domains for 3sqa:
      1. 2155469Domain d3sqaa_: 3sqa A: [306509]
        automated match to d4i6na_
        complexed with ca
      2. 2155470Domain d3sqab_: 3sqa B: [306510]
        automated match to d4i6na_
        complexed with ca
    27. Domains for 3tb3:
      1. 2155465Domain d3tb3a_: 3tb3 A: [195998]
        automated match to d3riia_
        complexed with ca
      2. 2155466Domain d3tb3b_: 3tb3 B: [195997]
        automated match to d3riia_
        complexed with ca
    28. Domains for 3von:
      1. 2155498Domain d3vona_: 3von A: [250625]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
      2. 2155499Domain d3vonh_: 3von H: [250632]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
      3. 2155500Domain d3vono_: 3von O: [250639]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
      4. 2155501Domain d3vonv_: 3von V: [250646]
        Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
        automated match to d4i6la_
    29. Domain for 4axl:
    30. Domains for 4axm:
      1. 2155476Domain d4axma_: 4axm A: [234106]
        automated match to d2xu3a_
        complexed with gol, v65
      2. 2155477Domain d4axmb_: 4axm B: [234109]
        automated match to d2xu3a_
        complexed with gol, v65
      3. 2155478Domain d4axmf_: 4axm F: [234107]
        automated match to d2xu3a_
        complexed with gol, v65
      4. 2155479Domain d4axmi_: 4axm I: [234110]
        automated match to d2xu3a_
        complexed with gol, v65
      5. 2155480Domain d4axml_: 4axm L: [234108]
        automated match to d2xu3a_
        complexed with gol, v65
      6. 2155481Domain d4axmo_: 4axm O: [234111]
        automated match to d2xu3a_
        complexed with gol, v65
    31. Domain for 4i6l:
    32. Domain for 4leg:
    33. Domain for 5f02:
    34. Domain for 5j94:
    35. Domains for 5ja7:
      1. 2283361Domain d5ja7a_: 5ja7 A: [326662]
        automated match to d4lega_
        complexed with 6hm, act, gol, so4; mutant
      2. 2283428Domain d5ja7b_: 5ja7 B: [326729]
        automated match to d4lega_
        complexed with 6hm, act, gol, so4; mutant
    36. Domain for 5k1c:
    37. Domain for 5l8w:
    38. Domain for 5mae:
    39. Domain for 5maj:
    40. Domain for 5mqy:
    41. Domain for 5ohk:
    42. Domain for 5ohp:
  6. 2155503Malaria parasite (Plasmodium falciparum) [TaxId:5833] [189172] (2 PDB entries)
    1. Domains for 2wdt:
      1. 2155504Domain d2wdta_: 2wdt A: [169255]
        Other proteins in same PDB: d2wdtb_, d2wdtd_
        automated match to d1ucha_
        complexed with cl
      2. 2155505Domain d2wdtc_: 2wdt C: [169257]
        Other proteins in same PDB: d2wdtb_, d2wdtd_
        automated match to d1ucha_
        complexed with cl
    2. Domains for 2we6:
      1. 2155506Domain d2we6a_: 2we6 A: [169270]
        automated match to d1ucha_
      2. 2155507Domain d2we6b_: 2we6 B: [169271]
        automated match to d1ucha_
  7. 2155508Mycobacterium abscessus [TaxId:561007] [228435] (1 PDB entry)
  8. 2155513Nematode (Caenorhabditis elegans) [TaxId:6239] [256233] (2 PDB entries)
    1. Domain for 4dhi:
    2. Domains for 4dhj:
      1. 2155515Domain d4dhja_: 4dhj A: [240059]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
      2. 2155516Domain d4dhje_: 4dhj E: [240060]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
      3. 2155517Domain d4dhji_: 4dhj I: [240061]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
      4. 2155518Domain d4dhjl_: 4dhj L: [240062]
        Other proteins in same PDB: d4dhjb_, d4dhjc_, d4dhjd_, d4dhjf_, d4dhjg_, d4dhjh_, d4dhjj_, d4dhjk_, d4dhjm_, d4dhjn_
        automated match to d4i6la_
  9. 2155519Nocardia farcinica [TaxId:37329] [231965] (1 PDB entry)
  10. 2155524Pachyrhizus erosus [TaxId:109171] [225133] (1 PDB entry)
  11. 2155526Polyporus squamosus [TaxId:5640] [233246] (2 PDB entries)
    1. Domains for 3phz:
      1. 2155527Domain d3phza2: 3phz A:149-286 [233249]
        Other proteins in same PDB: d3phza1, d3phzb1
        automated match to d2ihoa2
        complexed with sia
      2. 2155528Domain d3phzb2: 3phz B:149-286 [233248]
        Other proteins in same PDB: d3phza1, d3phzb1
        automated match to d2ihoa2
        complexed with sia
    2. Domains for 5mua:
      1. 2293332Domain d5muab2: 5mua B:149-286 [336633]
        Other proteins in same PDB: d5muaa1, d5muab1
        automated match to d3phza2
        complexed with ca, dms, e64, gal
      2. 2293376Domain d5muaa2: 5mua A:149-286 [336677]
        Other proteins in same PDB: d5muaa1, d5muab1
        automated match to d3phza2
        complexed with ca, dms, e64, gal
  12. 2155529Rhizobium loti [TaxId:381] [186994] (1 PDB entry)
  13. 2155531Toxoplasma gondii [TaxId:383379] [188681] (1 PDB entry)
  14. 2155533Trichinella spiralis [TaxId:6334] [197187] (1 PDB entry)
  15. 2155536Trypanosoma brucei [TaxId:999953] [256293] (1 PDB entry)
  16. 2155538Trypanosome (Trypanosoma brucei) [TaxId:5691] [189337] (2 PDB entries)
    1. Domains for 3hhi:
      1. 2155539Domain d3hhia_: 3hhi A: [177576]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
      2. 2155540Domain d3hhib_: 3hhi B: [177577]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
    2. Domains for 3mor:
      1. 2155541Domain d3mora_: 3mor A: [181467]
        automated match to d1pbha_
        complexed with cl, gol, na
      2. 2155542Domain d3morb_: 3mor B: [181468]
        automated match to d1pbha_
        complexed with cl, gol, na
  17. 2155543Yellow mealworm (Tenebrio molitor) [TaxId:7067] [189891] (2 PDB entries)
    1. Domains for 3qj3:
      1. 2155544Domain d3qj3a_: 3qj3 A: [184410]
        automated match to d7pcka_
        complexed with act
      2. 2155545Domain d3qj3b_: 3qj3 B: [184411]
        automated match to d7pcka_
        complexed with act
    2. Domain for 3qt4:
  18. 2271165Trypanosoma congolense [TaxId:5692] [314470] (1 PDB entry)
  19. 2272198Ficus carica [TaxId:3494] [315499] (5 PDB entries)
    1. Domains for 4yyq:
      1. 2272211Domain d4yyqb_: 4yyq B: [315512]
        automated match to d1cqda_
      2. 2272290Domain d4yyqa_: 4yyq A: [315591]
        automated match to d1cqda_
    2. Domain for 4yyr:
    3. Domain for 4yyu:
    4. Domain for 4yyv:
    5. Domain for 4yyw:
  20. 2275604Mus musculus [TaxId:10090] [318905] (2 PDB entries)
    1. Domains for 5cht:
      1. 2275605Domain d5chta1: 5cht A:46-367 [318906]
        Other proteins in same PDB: d5chta2
        automated match to d2ibia1
        complexed with zn
      2. 2275677Domain d5chtb_: 5cht B: [318978]
        Other proteins in same PDB: d5chta2
        automated match to d2ibia1
        complexed with zn
    2. Domains for 5chv:
      1. 2279971Domain d5chva_: 5chv A: [323272]
        Other proteins in same PDB: d5chvc1, d5chvc2, d5chvd1, d5chvd2
        automated match to d2ibia1
        complexed with cl, so4, zn
      2. 2279977Domain d5chvb_: 5chv B: [323278]
        Other proteins in same PDB: d5chvc1, d5chvc2, d5chvd1, d5chvd2
        automated match to d2ibia1
        complexed with cl, so4, zn

More info for Protein automated matches from d.3.1.0: automated matches

Timeline for Protein automated matches from d.3.1.0: automated matches: