SCOPe 2.08: Domain d2y5ba_: 2y5b A:

Lineage for d2y5ba_ (2y5b A:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.0: automated matches [191342] (1 protein)
   not a true family

6. Protein automated matches [190230] (23 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187072] (53 PDB entries)

8. Domain d2y5ba_: 2y5b A: [170606]
   Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
   automated match to d2ibia1
   complexed with so4, zn

Details for d2y5ba_

PDB Entry: 2y5b, 2.7 Å

PDB Description: Structure of USP21 in complex with linear diubiquitin-aldehyde

PDB Compounds: (A:) Ubiquitin carboxyl-terminal hydrolase 21

SCOPe Domain Sequences for d2y5ba_:

Sequence, based on SEQRES records:

>d2y5ba_ d.3.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
htlllgsghvglrnlgntcflnavlqclsstrplrdfclrrdfrqevpgggraqelteaf
advigalwhpdsceavnptrfravfqkyvpsfsgysqqdaqeflkllmerlhleinrrgr
rappilangpvpspprrggalleepelsdddranlmwkryleredskivdlfvgqlkscl
kcqacgyrsttfevfcdlslpipkkgfaggkvslrdcfnlftkeeelesenapvcdrcrq
ktrstkkltvqrfprilvlhlnrfsasrgsikkssvgvdfplqrlslgdfasdkagspvy
qlyalcnhsgsvhyghytalcrcqtgwhvyndsrvspvsenqvassegyvlfyqlm

Sequence, based on observed residues (ATOM records):

>d2y5ba_ d.3.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
htlllgsghvglrnlgntcflnavlqclsstrplrdfclrrdfrqevraqelteafadvi
galwhpdsceavnptrfravfqkyvpsfsgysqqdaqeflkllmerlhleinrrsdddra
nlmwkryleredskivdlfvgqlksclkcqacgyrsttfevfcdlslpipkkkvslrdcf
nlftkeeelesenapvcdrcrqktrstkkltvqrfprilvlhlnrfsasrgsikkssvgv
dfplqrlslgdfasdspvyqlyalcnhsgsvhyghytalcrcqtgwhvyndsrvspvsen
qvassegyvlfyqlm

Timeline for d2y5ba_:

• d2y5ba_ first appeared in SCOPe 2.01
  
• d2y5ba_ appears in SCOPe 2.07