Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1014844Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 1014845Superfamily d.3.1: Cysteine proteinases [54001] (23 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 1015509Family d.3.1.0: automated matches [191342] (1 protein)
    not a true family
  6. 1015510Protein automated matches [190230] (9 species)
    not a true protein

Species:

  1. 1015511Blood fluke (Schistosoma mansoni) [TaxId:6183] [189710] (3 PDB entries)
    1. Domain for 3qsd:
    2. Domain for 3s3q:
    3. Domains for 3s3r:
      1. 1015514Domain d3s3ra_: 3s3r A: [185257]
        automated match to d1qdqa_
        complexed with 0iw
      2. 1015515Domain d3s3rb_: 3s3r B: [185258]
        automated match to d1qdqa_
        complexed with 0iw
      3. 1015516Domain d3s3rc_: 3s3r C: [185259]
        automated match to d1qdqa_
        complexed with 0iw
  2. 1015517Crocus sativus [TaxId:82528] [189777] (1 PDB entry)
  3. 1015519Fasciola hepatica [TaxId:6192] [188299] (1 PDB entry)
  4. 1015521Human (Homo sapiens) [TaxId:9606] [187072] (8 PDB entries)
    1. Domain for 2etl:
    2. Domains for 2y5b:
      1. 1015531Domain d2y5ba_: 2y5b A: [170606]
        automated match to d2ibia1
        complexed with so4, zn
      2. 1015532Domain d2y5be_: 2y5b E: [170607]
        automated match to d2ibia1
        complexed with so4, zn
    3. Domain for 2zfy:
    4. Domain for 3a7s:
    5. Domains for 3i3t:
      1. 1015527Domain d3i3ta_: 3i3t A: [178066]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      2. 1015528Domain d3i3tc_: 3i3t C: [178068]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      3. 1015529Domain d3i3te_: 3i3t E: [178070]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
      4. 1015530Domain d3i3tg_: 3i3t G: [178072]
        Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
        automated match to d2ibia1
        complexed with neh, zn
    6. Domains for 3mtn:
      1. 1015533Domain d3mtna_: 3mtn A: [181546]
        Other proteins in same PDB: d3mtnb_, d3mtnd_
        automated match to d2ibia1
        complexed with cl, gol, zn
      2. 1015534Domain d3mtnc_: 3mtn C: [181548]
        Other proteins in same PDB: d3mtnb_, d3mtnd_
        automated match to d2ibia1
        complexed with cl, gol, zn
    7. Domains for 3rii:
      1. 1015524Domain d3riia_: 3rii A: [184984]
        automated match to d1ucha_
        complexed with edo, mg
      2. 1015525Domain d3riib_: 3rii B: [184985]
        automated match to d1ucha_
        complexed with edo, mg
    8. Domains for 3ris:
      1. 1015535Domain d3risa_: 3ris A: [184990]
        automated match to d1ucha_
        complexed with gol, so4
      2. 1015536Domain d3risb_: 3ris B: [184991]
        automated match to d1ucha_
        complexed with gol, so4
      3. 1015537Domain d3risc_: 3ris C: [184992]
        automated match to d1ucha_
        complexed with gol, so4
      4. 1015538Domain d3risd_: 3ris D: [184993]
        automated match to d1ucha_
        complexed with gol, so4
  5. 1015539Malaria parasite (Plasmodium falciparum) [TaxId:5833] [189172] (2 PDB entries)
    1. Domains for 2wdt:
      1. 1015540Domain d2wdta_: 2wdt A: [169255]
        Other proteins in same PDB: d2wdtb_, d2wdtd_
        automated match to d1ucha_
        complexed with cl
      2. 1015541Domain d2wdtc_: 2wdt C: [169257]
        Other proteins in same PDB: d2wdtb_, d2wdtd_
        automated match to d1ucha_
        complexed with cl
    2. Domains for 2we6:
      1. 1015542Domain d2we6a_: 2we6 A: [169270]
        automated match to d1ucha_
      2. 1015543Domain d2we6b_: 2we6 B: [169271]
        automated match to d1ucha_
  6. 1015544Rhizobium loti [TaxId:381] [186994] (1 PDB entry)
  7. 1015546Toxoplasma gondii [TaxId:383379] [188681] (1 PDB entry)
  8. 1015548Trypanosome (Trypanosoma brucei) [TaxId:5691] [189337] (2 PDB entries)
    1. Domains for 3hhi:
      1. 1015549Domain d3hhia_: 3hhi A: [177576]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
      2. 1015550Domain d3hhib_: 3hhi B: [177577]
        automated match to d1pbha_
        complexed with 074, gol, li, mg, trs
    2. Domains for 3mor:
      1. 1015551Domain d3mora_: 3mor A: [181467]
        automated match to d1pbha_
        complexed with cl, gol, na
      2. 1015552Domain d3morb_: 3mor B: [181468]
        automated match to d1pbha_
        complexed with cl, gol, na
  9. 1015553Yellow mealworm (Tenebrio molitor) [TaxId:7067] [189891] (1 PDB entry)

More info for Protein automated matches from d.3.1.0: automated matches

Timeline for Protein automated matches from d.3.1.0: automated matches: