Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2926589Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2926590Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2927640Family d.3.1.0: automated matches [191342] (1 protein)
    not a true family
  6. 2927641Protein automated matches [190230] (23 species)
    not a true protein
  7. 2927669Species Human (Homo sapiens) [TaxId:9606] [187072] (53 PDB entries)

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1dkv:
  2. Domain(s) for 2etl:
  3. Domain(s) for 2nqd:
  4. Domain(s) for 2xu3:
  5. Domain(s) for 2xu4:
  6. Domain(s) for 2xu5:
  7. Domain(s) for 2y5b:
    1. 2927727Domain d2y5ba_: 2y5b A: [170606]
      Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
      automated match to d2ibia1
      complexed with so4, zn
    2. 2927728Domain d2y5be_: 2y5b E: [170607]
      Other proteins in same PDB: d2y5bb1, d2y5bb2, d2y5bf1, d2y5bf2
      automated match to d2ibia1
      complexed with so4, zn
  8. Domain(s) for 2yj2:
  9. Domain(s) for 2yj8:
  10. Domain(s) for 2yj9:
  11. Domain(s) for 2yjb:
  12. Domain(s) for 2yjc:
  13. Domain(s) for 2zfy:
  14. Domain(s) for 3a7s:
  15. Domain(s) for 3bc3:
    1. 2927731Domain d3bc3a_: 3bc3 A: [231838]
      automated match to d2xu3a_
      complexed with opt
    2. 2927732Domain d3bc3b_: 3bc3 B: [231837]
      automated match to d2xu3a_
      complexed with opt
  16. Domain(s) for 3h89:
    1. 2927738Domain d3h89a_: 3h89 A: [232420]
      automated match to d2xu3a_
      complexed with nsx
    2. 2927739Domain d3h89b_: 3h89 B: [232422]
      automated match to d2xu3a_
      complexed with nsx
    3. 2927740Domain d3h89c_: 3h89 C: [232424]
      automated match to d2xu3a_
      complexed with nsx
    4. 2927741Domain d3h89d_: 3h89 D: [232425]
      automated match to d2xu3a_
      complexed with nsx
    5. 2927742Domain d3h89e_: 3h89 E: [232421]
      automated match to d2xu3a_
      complexed with nsx
    6. 2927743Domain d3h89f_: 3h89 F: [232423]
      automated match to d2xu3a_
      complexed with nsx
  17. Domain(s) for 3h8b:
    1. 2927688Domain d3h8ba_: 3h8b A: [232426]
      automated match to d2xu3a_
      complexed with nsy
    2. 2927689Domain d3h8bb_: 3h8b B: [232427]
      automated match to d2xu3a_
      complexed with nsy
    3. 2927690Domain d3h8bc_: 3h8b C: [232429]
      automated match to d2xu3a_
      complexed with nsy
    4. 2927691Domain d3h8bd_: 3h8b D: [232428]
      automated match to d2xu3a_
      complexed with nsy
    5. 2927692Domain d3h8be_: 3h8b E: [232431]
      automated match to d2xu3a_
      complexed with nsy
    6. 2927693Domain d3h8bf_: 3h8b F: [232430]
      automated match to d2xu3a_
      complexed with nsy
  18. Domain(s) for 3h8c:
    1. 2927745Domain d3h8ca_: 3h8c A: [232432]
      automated match to d2xu3a_
      complexed with nsz
    2. 2927746Domain d3h8cb_: 3h8c B: [232433]
      automated match to d2xu3a_
      complexed with nsz
  19. Domain(s) for 3i3t:
    1. 2927711Domain d3i3ta_: 3i3t A: [178066]
      Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
      automated match to d2ibia1
      complexed with neh, zn
    2. 2927712Domain d3i3tc_: 3i3t C: [178068]
      Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
      automated match to d2ibia1
      complexed with neh, zn
    3. 2927713Domain d3i3te_: 3i3t E: [178070]
      Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
      automated match to d2ibia1
      complexed with neh, zn
    4. 2927714Domain d3i3tg_: 3i3t G: [178072]
      Other proteins in same PDB: d3i3tb_, d3i3td_, d3i3tf_, d3i3th_
      automated match to d2ibia1
      complexed with neh, zn
  20. Domain(s) for 3iv2:
    1. 2927702Domain d3iv2a_: 3iv2 A: [232636]
      automated match to d2xu4a_
      complexed with gol, na, nag, so4; mutant
    2. 2927703Domain d3iv2b_: 3iv2 B: [232635]
      automated match to d2xu4a_
      complexed with gol, na, nag, so4; mutant
  21. Domain(s) for 3mtn:
    1. 2927729Domain d3mtna_: 3mtn A: [181546]
      Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2
      automated match to d2ibia1
      complexed with cl, gol, zn
    2. 2927730Domain d3mtnc_: 3mtn C: [181548]
      Other proteins in same PDB: d3mtnb1, d3mtnb2, d3mtnd1, d3mtnd2
      automated match to d2ibia1
      complexed with cl, gol, zn
  22. Domain(s) for 3of8:
  23. Domain(s) for 3of9:
  24. Domain(s) for 3rii:
    1. 2927694Domain d3riia_: 3rii A: [184984]
      automated match to d1ucha_
      complexed with edo, mg
    2. 2927695Domain d3riib_: 3rii B: [184985]
      automated match to d1ucha_
      complexed with edo, mg
  25. Domain(s) for 3ris:
    1. 2927723Domain d3risa_: 3ris A: [184990]
      automated match to d1ucha_
      complexed with gol, so4
    2. 2927724Domain d3risb_: 3ris B: [184991]
      automated match to d1ucha_
      complexed with gol, so4
    3. 2927725Domain d3risc_: 3ris C: [184992]
      automated match to d1ucha_
      complexed with gol, so4
    4. 2927726Domain d3risd_: 3ris D: [184993]
      automated match to d1ucha_
      complexed with gol, so4
  26. Domain(s) for 3sqa:
    1. 2927706Domain d3sqaa_: 3sqa A: [306509]
      automated match to d4i6na_
      complexed with ca
    2. 2927707Domain d3sqab_: 3sqa B: [306510]
      automated match to d4i6na_
      complexed with ca
  27. Domain(s) for 3tb3:
    1. 2927735Domain d3tb3a_: 3tb3 A: [195998]
      automated match to d3riia_
      complexed with ca
    2. 2927736Domain d3tb3b_: 3tb3 B: [195997]
      automated match to d3riia_
      complexed with ca
  28. Domain(s) for 3von:
    1. 2927747Domain d3vona_: 3von A: [250625]
      Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
      automated match to d4i6la_
    2. 2927748Domain d3vonh_: 3von H: [250632]
      Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
      automated match to d4i6la_
    3. 2927749Domain d3vono_: 3von O: [250639]
      Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
      automated match to d4i6la_
    4. 2927750Domain d3vonv_: 3von V: [250646]
      Other proteins in same PDB: d3vonb_, d3vonc_, d3vond_, d3vone_, d3vonf_, d3vong_, d3voni_, d3vonj_, d3vonk_, d3vonl_, d3vonm_, d3vonn_, d3vonp_, d3vonq_, d3vonr_, d3vons_, d3vont_, d3vonu_, d3vonw_, d3vonx_, d3vony_, d3vonz_
      automated match to d4i6la_
  29. Domain(s) for 4axl:
  30. Domain(s) for 4axm:
    1. 2927717Domain d4axma_: 4axm A: [234106]
      automated match to d2xu3a_
      complexed with gol, v65
    2. 2927718Domain d4axmb_: 4axm B: [234109]
      automated match to d2xu3a_
      complexed with gol, v65
    3. 2927719Domain d4axmf_: 4axm F: [234107]
      automated match to d2xu3a_
      complexed with gol, v65
    4. 2927720Domain d4axmi_: 4axm I: [234110]
      automated match to d2xu3a_
      complexed with gol, v65
    5. 2927721Domain d4axml_: 4axm L: [234108]
      automated match to d2xu3a_
      complexed with gol, v65
    6. 2927722Domain d4axmo_: 4axm O: [234111]
      automated match to d2xu3a_
      complexed with gol, v65
  31. Domain(s) for 4i6l:
  32. Domain(s) for 5cvm:
  33. Domain(s) for 5f02:
  34. Domain(s) for 5j94:
  35. Domain(s) for 5ja7:
    1. 2927686Domain d5ja7a_: 5ja7 A: [326662]
      automated match to d4lega_
      complexed with 6hm, act, gol, so4; mutant
    2. 2927687Domain d5ja7b_: 5ja7 B: [326729]
      automated match to d4lega_
      complexed with 6hm, act, gol, so4; mutant
  36. Domain(s) for 5k16:
    1. 2927755Domain d5k16a_: 5k16 A: [345721]
      automated match to d5l8wa_
      complexed with gol, zn
    2. 2927756Domain d5k16b_: 5k16 B: [345722]
      automated match to d5l8wa_
      complexed with gol, zn
  37. Domain(s) for 5k1c:
  38. Domain(s) for 5l8h:
  39. Domain(s) for 5l8w:
  40. Domain(s) for 5mae:
  41. Domain(s) for 5maj:
  42. Domain(s) for 5mqy:
  43. Domain(s) for 5ohk:
  44. Domain(s) for 5ohp:
  45. Domain(s) for 6cpm:
    1. 2927709Domain d6cpmc1: 6cpm C:277-615 [362683]
      Other proteins in same PDB: d6cpmc2, d6cpmd2, d6cpme_, d6cpmf_
      automated match to d3nhea_
      complexed with ca, edo, gol, na, zn
    2. 2927710Domain d6cpmd1: 6cpm D:280-615 [362663]
      Other proteins in same PDB: d6cpmc2, d6cpmd2, d6cpme_, d6cpmf_
      automated match to d3nhea_
      complexed with ca, edo, gol, na, zn
  46. Domain(s) for 6crn:
    1. 2927751Domain d6crna1: 6crn A:280-624 [362750]
      Other proteins in same PDB: d6crna2, d6crnd2, d6crne_, d6crnf_, d6crng_, d6crnh_
      automated match to d2hd5a1
      complexed with zn
    2. 2927752Domain d6crnb_: 6crn B: [362651]
      Other proteins in same PDB: d6crna2, d6crnd2, d6crne_, d6crnf_, d6crng_, d6crnh_
      automated match to d2hd5a1
      complexed with zn
    3. 2927753Domain d6crnc_: 6crn C: [362652]
      Other proteins in same PDB: d6crna2, d6crnd2, d6crne_, d6crnf_, d6crng_, d6crnh_
      automated match to d2hd5a1
      complexed with zn
    4. 2927754Domain d6crnd1: 6crn D:280-624 [362711]
      Other proteins in same PDB: d6crna2, d6crnd2, d6crne_, d6crnf_, d6crng_, d6crnh_
      automated match to d2hd5a1
      complexed with zn
  47. Domain(s) for 6ezp:
  48. Domain(s) for 6gh9:
    1. 2927715Domain d6gh9a_: 6gh9 A: [416009]
      automated match to d6crnb_
      complexed with dms, mix, zn
    2. 2927716Domain d6gh9b_: 6gh9 B: [416010]
      automated match to d6crnb_
      complexed with dms, mix, zn
  49. Domain(s) for 6gha:
  50. Domain(s) for 6jlq:
  51. Domain(s) for 6ml1:
  52. Domain(s) for 6p3q:
    1. 2927757Domain d6p3qa1: 6p3q A:4-343 [379909]
      Other proteins in same PDB: d6p3qa2, d6p3qb2
      automated match to d1tl9a_
    2. 2927758Domain d6p3qb1: 6p3q B:5-343 [379814]
      Other proteins in same PDB: d6p3qa2, d6p3qb2
      automated match to d1tl9a_
  53. Domain(s) for 6ql8:

More info for Species Human (Homo sapiens) [TaxId:9606] from d.3.1.0 automated matches

Timeline for Species Human (Homo sapiens) [TaxId:9606] from d.3.1.0 automated matches: