Lineage for d5cvmb1 (5cvm B:1-59)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2501110Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2501111Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2501112Family d.15.1.1: Ubiquitin-related [54237] (39 protein domains)
    Pfam PF00240
  6. 2501389Protein Ubiquitin [54238] (8 species)
  7. 2501491Species Human (Homo sapiens) [TaxId:9606] [54239] (220 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 2501659Domain d5cvmb1: 5cvm B:1-59 [277858]
    Other proteins in same PDB: d5cvma_, d5cvmb2, d5cvmb3
    automated match to d3v6eb_
    complexed with zn

Details for d5cvmb1

PDB Entry: 5cvm (more details), 1.9 Å

PDB Description: usp46~ubiquitin bea covalent complex
PDB Compounds: (B:) Polyubiquitin-B

SCOPe Domain Sequences for d5cvmb1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5cvmb1 d.15.1.1 (B:1-59) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy

SCOPe Domain Coordinates for d5cvmb1:

Click to download the PDB-style file with coordinates for d5cvmb1.
(The format of our PDB-style files is described here.)

Timeline for d5cvmb1:

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Domains from other chains:
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d5cvma_