PDB entry 6k9p

View 6k9p on RCSB PDB site
Description: Structure of Deubiquitinase
Class: hydrolase
Keywords: In complex with ubiquitin, HYDROLASE
Deposited on 2019-06-17, released 2020-06-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: ubiquitin thioesterase
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: OsJ_28104
    Database cross-references and differences (RAF-indexed):
    • Uniprot B9G207 (2-252)
      • expression tag (1)
    Domains in SCOPe 2.08: d6k9pb1, d6k9pb2
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k9pg_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6k9pB (B:)
gsklpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsyl
ehiletqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessiga
eellertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmge
esdhvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitl
lyrpghydilypk

    Sequence, based on observed residues (ATOM records): (download) 
    >6k9pB (B:)
sklpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsyle
hiletqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigae
ellertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgee
sdhvhiialsdalgvpirvmyldrsscdagnisvnhhdfspekpyitllyrpghydilyp
k

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6k9pG (G:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg