PDB entry 6k9n

View 6k9n on RCSB PDB site
Description: Rice_OTUB_like_catalytic domain
Class: hydrolase
Keywords: Deubiquitinase, HYDROLASE
Deposited on 2019-06-17, released 2020-06-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-24, with a file datestamp of 2020-06-19.
Experiment type: XRAY
Resolution: 2.27 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin thioesterase
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: OsJ_28104
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k9na_
  • Chain 'B':
    Compound: ubiquitin thioesterase
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: OsJ_28104
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k9nb_
  • Chain 'C':
    Compound: ubiquitin thioesterase
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: OsJ_28104
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k9nc_
  • Chain 'D':
    Compound: ubiquitin thioesterase
    Species: Oryza sativa subsp. japonica [TaxId:39947]
    Gene: OsJ_28104
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6k9nd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6k9nA (A:)
gsklpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsyl
ehiletqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessiga
eellertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmge
esdhvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitl
lyrpghydilypk

    Sequence, based on observed residues (ATOM records): (download) 
    >6k9nA (A:)
lpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsylehi
letqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigaeel
lertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgeesd
hvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitllyr
pghydilypk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6k9nB (B:)
gsklpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsyl
ehiletqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessiga
eellertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmge
esdhvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitl
lyrpghydilypk

    Sequence, based on observed residues (ATOM records): (download) 
    >6k9nB (B:)
lpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsylehi
letqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigaeel
lertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgeesd
hvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitllyr
pghydilypk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6k9nC (C:)
gsklpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsyl
ehiletqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessiga
eellertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmge
esdhvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitl
lyrpghydilypk

    Sequence, based on observed residues (ATOM records): (download) 
    >6k9nC (C:)
lpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsylehi
letqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigaeel
lertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgeesd
hvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitllyr
pghydilypk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6k9nD (D:)
gsklpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsyl
ehiletqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessiga
eellertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmge
esdhvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitl
lyrpghydilypk

    Sequence, based on observed residues (ATOM records): (download) 
    >6k9nD (D:)
lpyvgdkeplstlaaefqsgspilqekikllgeqydalrrtrgdgncfyrsfmfsylehi
letqdkaeverilkkieqckktladlgyieftfedffsifidqlesvlqghessigaeel
lertrdqmvsdyvvmffrfvtsgeiqrraeffepfisgltnstvvqfckasvepmgeesd
hvhiialsdalgvpirvmyldrsscdagnisvnhhdfspeanssdgaaaaekpyitllyr
pghydilypk