Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2061576Fold b.55: PH domain-like barrel [50728] (2 superfamilies)
    barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
  4. 2061577Superfamily b.55.1: PH domain-like [50729] (14 families) (S)
  5. 2062158Family b.55.1.0: automated matches [191311] (1 protein)
    not a true family
  6. 2062159Protein automated matches [190052] (6 species)
    not a true protein

Species:

  1. 2062160Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [194506] (31 PDB entries)
    1. Domain for 3m1i:
    2. Domain for 4gmx:
    3. Domain for 4gpt:
    4. Domain for 4hat:
    5. Domain for 4hau:
    6. Domain for 4hav:
    7. Domain for 4haw:
    8. Domain for 4hax:
    9. Domain for 4hay:
    10. Domain for 4haz:
    11. Domain for 4hb0:
    12. Domain for 4hb2:
    13. Domain for 4hb3:
    14. Domain for 4hb4:
    15. Domain for 4wvf:
    16. Domain for 5dh9:
    17. Domain for 5dha:
    18. Domain for 5dhf:
    19. Domain for 5di9:
    20. Domain for 5dif:
    21. Domain for 5jlj:
    22. Domain for 5uwh:
    23. Domain for 5uwi:
    24. Domain for 5uwo:
    25. Domain for 5uwp:
    26. Domain for 5uwq:
    27. Domain for 5uwr:
    28. Domain for 5uws:
    29. Domain for 5uwt:
    30. Domain for 5uwu:
    31. Domain for 5uww:
  2. 2062181Chicken (Gallus gallus) [TaxId:9031] [254875] (2 PDB entries)
    1. Domain for 2j0m:
    2. Domain for 3zdt:
  3. 2062184Human (Homo sapiens) [TaxId:9606] [186914] (54 PDB entries)
    1. Domain for 1zm0:
    2. Domain for 2d9x:
    3. Domain for 2d9y:
    4. Domain for 2d9z:
    5. Domain for 2dhj:
    6. Domain for 2dkp:
    7. Domain for 2dlw:
    8. Domain for 2dn6:
    9. Domain for 2dyq:
    10. Domain for 2he7:
    11. Domain for 2jp2:
    12. Domain for 2kcj:
    13. Domain for 2lul:
    14. Domain for 2m38:
    15. Domain for 2mdx:
    16. Domain for 2q13:
    17. Domain for 2rsg:
    18. Domain for 2yry:
    19. Domain for 2z0o:
    20. Domain for 3cik:
    21. Domains for 3dxc:
      1. 2062199Domain d3dxca_: 3dxc A: [174317]
        automated match to d1wgua_
      2. 2062200Domain d3dxcc_: 3dxc C: [174318]
        automated match to d1wgua_
    22. Domains for 3dxd:
      1. 2062202Domain d3dxda_: 3dxd A: [174319]
        automated match to d1wgua_
        mutant
      2. 2062203Domain d3dxdc_: 3dxd C: [174320]
        automated match to d1wgua_
        mutant
    23. Domains for 3dxe:
      1. 2062192Domain d3dxea_: 3dxe A: [174321]
        automated match to d1wgua_
        mutant
      2. 2062193Domain d3dxec_: 3dxe C: [174322]
        automated match to d1wgua_
        mutant
    24. Domain for 3krw:
    25. Domain for 3krx:
    26. Domains for 3odo:
      1. 2062217Domain d3odoa2: 3odo A:624-761 [233081]
        Other proteins in same PDB: d3odoa1, d3odoa3, d3odob1, d3odob3
        automated match to d1xcga2
      2. 2062218Domain d3odob2: 3odo B:624-761 [233082]
        Other proteins in same PDB: d3odoa1, d3odoa3, d3odob1, d3odob3
        automated match to d1xcga2
    27. Domains for 3p6a:
      1. 2062210Domain d3p6aa2: 3p6a A:624-765 [233181]
        Other proteins in same PDB: d3p6aa1, d3p6ab1
        automated match to d1xcga2
        mutant
      2. 2062211Domain d3p6ab2: 3p6a B:624-765 [233178]
        Other proteins in same PDB: d3p6aa1, d3p6ab1
        automated match to d1xcga2
        mutant
    28. Domains for 3qij:
      1. 2062185Domain d3qija3: 3qij A:397-488 [248904]
        Other proteins in same PDB: d3qija1, d3qija2, d3qija4, d3qijb1, d3qijb2, d3qijb4
        automated match to d1gg3a2
        complexed with unx
      2. 2062186Domain d3qijb3: 3qij B:397-488 [248907]
        Other proteins in same PDB: d3qija1, d3qija2, d3qija4, d3qijb1, d3qijb2, d3qijb4
        automated match to d1gg3a2
        complexed with unx
    29. Domain for 3rcp:
    30. Domains for 3u8z:
      1. 2062206Domain d3u8za2: 3u8z A:215-312 [250152]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
      2. 2062207Domain d3u8zb2: 3u8z B:215-312 [250154]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
      3. 2062208Domain d3u8zc3: 3u8z C:215-312 [250157]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
      4. 2062209Domain d3u8zd2: 3u8z D:215-312 [250159]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
    31. Domain for 3v5w:
    32. Domains for 4hhv:
      1. 2062188Domain d4hhva1: 4hhv A:20-121 [266337]
        Other proteins in same PDB: d4hhva2
        automated match to d2d9ya_
        complexed with act, cl, gol, so4
      2. 2062189Domain d4hhvb_: 4hhv B: [266338]
        Other proteins in same PDB: d4hhva2
        automated match to d2d9ya_
        complexed with act, cl, gol, so4
    33. Domain for 4ifs:
    34. Domain for 4l6e:
    35. Domains for 4my6:
      1. 2062195Domain d4my6a_: 4my6 A: [263067]
        Other proteins in same PDB: d4my6b2
        automated match to d2jp2a_
        complexed with 3vh, br
      2. 2062196Domain d4my6b1: 4my6 B:1-111 [260330]
        Other proteins in same PDB: d4my6b2
        automated match to d2jp2a_
        complexed with 3vh, br
    36. Domains for 4ny0:
      1. 2062220Domain d4ny0a3: 4ny0 A:254-362 [254033]
        Other proteins in same PDB: d4ny0a1, d4ny0a2, d4ny0b1, d4ny0b2, d4ny0d1, d4ny0d2
        automated match to d2al6a2
      2. 2062221Domain d4ny0b3: 4ny0 B:254-362 [254036]
        Other proteins in same PDB: d4ny0a1, d4ny0a2, d4ny0b1, d4ny0b2, d4ny0d1, d4ny0d2
        automated match to d2al6a2
      3. 2062222Domain d4ny0d3: 4ny0 D:254-362 [254039]
        Other proteins in same PDB: d4ny0a1, d4ny0a2, d4ny0b1, d4ny0b2, d4ny0d1, d4ny0d2
        automated match to d2al6a2
    37. Domain for 4pnk:
    38. Domains for 4rma:
      1. 2062197Domain d4rmaa3: 4rma A:199-296 [309472]
        Other proteins in same PDB: d4rmaa1, d4rmaa2, d4rmab1, d4rmab2
        automated match to d2zpya2
        complexed with so4
      2. 2062198Domain d4rmab3: 4rma B:199-296 [309475]
        Other proteins in same PDB: d4rmaa1, d4rmaa2, d4rmab1, d4rmab2
        automated match to d2zpya2
        complexed with so4
    39. Domains for 4zri:
      1. 2062225Domain d4zria3: 4zri A:215-312 [274142]
        Other proteins in same PDB: d4zria1, d4zria2, d4zrib1, d4zrib2
        automated match to d1h4ra2
      2. 2062226Domain d4zrib3: 4zri B:215-311 [274139]
        Other proteins in same PDB: d4zria1, d4zria2, d4zrib1, d4zrib2
        automated match to d1h4ra2
    40. Domain for 4zrj:
    41. Domains for 5c16:
      1. 2272912Domain d5c16b1: 5c16 B:98-219 [316213]
        Other proteins in same PDB: d5c16a2, d5c16b2, d5c16c2, d5c16d2
        automated match to d1lw3a1
        complexed with po4
      2. 2272932Domain d5c16d1: 5c16 D:98-219 [316233]
        Other proteins in same PDB: d5c16a2, d5c16b2, d5c16c2, d5c16d2
        automated match to d1lw3a1
        complexed with po4
      3. 2273101Domain d5c16a1: 5c16 A:98-219 [316402]
        Other proteins in same PDB: d5c16a2, d5c16b2, d5c16c2, d5c16d2
        automated match to d1lw3a1
        complexed with po4
      4. 2273108Domain d5c16c1: 5c16 C:98-219 [316409]
        Other proteins in same PDB: d5c16a2, d5c16b2, d5c16c2, d5c16d2
        automated match to d1lw3a1
        complexed with po4
    42. Domains for 5c5b:
      1. 2275388Domain d5c5bb2: 5c5b B:274-374 [318689]
        Other proteins in same PDB: d5c5ba1, d5c5ba3, d5c5bb1, d5c5bc1, d5c5bc3, d5c5bd1
        automated match to d2z0oa2
        complexed with gol
      2. 2275401Domain d5c5bc2: 5c5b C:274-375 [318702]
        Other proteins in same PDB: d5c5ba1, d5c5ba3, d5c5bb1, d5c5bc1, d5c5bc3, d5c5bd1
        automated match to d2q13a2
        complexed with gol
      3. 2275407Domain d5c5bd2: 5c5b D:274-375 [318708]
        Other proteins in same PDB: d5c5ba1, d5c5ba3, d5c5bb1, d5c5bc1, d5c5bc3, d5c5bd1
        automated match to d2z0oa2
        complexed with gol
      4. 2275411Domain d5c5ba2: 5c5b A:274-375 [318712]
        Other proteins in same PDB: d5c5ba1, d5c5ba3, d5c5bb1, d5c5bc1, d5c5bc3, d5c5bd1
        automated match to d2q13a2
        complexed with gol
    43. Domains for 5cll:
      1. 2062223Domain d5cllb_: 5cll B: [276671]
        Other proteins in same PDB: d5clla_, d5cllc_
        automated match to d4hb2b_
        complexed with bef, gdp, mg
      2. 2062224Domain d5clld_: 5cll D: [276672]
        Other proteins in same PDB: d5clla_, d5cllc_
        automated match to d4hb2b_
        complexed with bef, gdp, mg
    44. Domain for 5d27:
    45. Domains for 5d3v:
      1. 2273253Domain d5d3va1: 5d3v A:245-407 [316554]
        Other proteins in same PDB: d5d3va2
        automated match to d5d3yb_
        complexed with flc
      2. 2273276Domain d5d3vb_: 5d3v B: [316577]
        Other proteins in same PDB: d5d3va2
        automated match to d5d3yb_
        complexed with flc
    46. Domains for 5d3w:
      1. 2273255Domain d5d3wb_: 5d3w B: [316556]
        Other proteins in same PDB: d5d3wa2
        automated match to d5d3yb_
        complexed with so4
      2. 2273270Domain d5d3wa1: 5d3w A:245-407 [316571]
        Other proteins in same PDB: d5d3wa2
        automated match to d5d3yb_
        complexed with so4
    47. Domains for 5d3x:
      1. 2273247Domain d5d3xb1: 5d3x B:245-401 [316548]
        Other proteins in same PDB: d5d3xa2, d5d3xb2
        automated match to d5d3yb_
        complexed with 4ip
      2. 2273280Domain d5d3xa1: 5d3x A:245-406 [316581]
        Other proteins in same PDB: d5d3xa2, d5d3xb2
        automated match to d5d3yb_
        complexed with 4ip
    48. Domains for 5d3y:
      1. 2272747Domain d5d3yb_: 5d3y B: [316048]
        automated match to d1pmsa_
        complexed with 4ip
      2. 2272767Domain d5d3ya_: 5d3y A: [316068]
        automated match to d1pmsa_
        complexed with 4ip
    49. Domain for 5he1:
    50. Domain for 5jjd:
    51. Domain for 5mr1:
    52. Domains for 5nqh:
      1. 2290500Domain d5nqhc_: 5nqh C: [333801]
        automated match to d3dxda_
        complexed with gol, so4
      2. 2290527Domain d5nqhb_: 5nqh B: [333828]
        automated match to d3dxda_
        complexed with gol, so4
      3. 2290550Domain d5nqha_: 5nqh A: [333851]
        automated match to d3dxda_
        complexed with gol, so4
      4. 2290680Domain d5nqhd_: 5nqh D: [333981]
        automated match to d3dxda_
        complexed with gol, so4
    53. Domain for 5ukk:
    54. Domain for 5ukl:
  4. 2062242Mouse (Mus musculus) [TaxId:10090] [232271] (5 PDB entries)
    1. Domains for 2d2q:
      1. 2062255Domain d2d2qa2: 2d2q A:199-299 [131183]
        Other proteins in same PDB: d2d2qa1, d2d2qa3, d2d2qb1, d2d2qb3
        automated match to d2zpya2
      2. 2062256Domain d2d2qb2: 2d2q B:199-304 [131186]
        Other proteins in same PDB: d2d2qa1, d2d2qa3, d2d2qb1, d2d2qb3
        automated match to d2zpya2
    2. Domains for 3g9w:
      1. 2062243Domain d3g9wa2: 3g9w A:312-408 [232273]
        Other proteins in same PDB: d3g9wa1, d3g9wa3, d3g9wb1
        automated match to d1mixa2
        complexed with gol, peg
      2. 2062244Domain d3g9wb2: 3g9w B:312-408 [232274]
        Other proteins in same PDB: d3g9wa1, d3g9wa3, d3g9wb1
        automated match to d1mixa2
        complexed with gol, peg
    3. Domains for 3wa0:
      1. 2062245Domain d3wa0a3: 3wa0 A:215-312 [256459]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      2. 2062246Domain d3wa0b3: 3wa0 B:215-312 [262356]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      3. 2062247Domain d3wa0c3: 3wa0 C:215-313 [262359]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      4. 2062248Domain d3wa0d3: 3wa0 D:215-313 [262362]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      5. 2062249Domain d3wa0e3: 3wa0 E:215-312 [262365]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      6. 2062250Domain d3wa0f3: 3wa0 F:215-311 [262368]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
    4. Domains for 4p7i:
      1. 2062257Domain d4p7ia3: 4p7i A:215-312 [259916]
        Other proteins in same PDB: d4p7ia1, d4p7ia2, d4p7ib1, d4p7ib2
        automated match to d1h4ra2
        complexed with gol
      2. 2062258Domain d4p7ib3: 4p7i B:215-312 [263444]
        Other proteins in same PDB: d4p7ia1, d4p7ia2, d4p7ib1, d4p7ib2
        automated match to d1h4ra2
        complexed with gol
    5. Domains for 4zrk:
      1. 2062251Domain d4zrka3: 4zrk A:215-311 [274132]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
      2. 2062252Domain d4zrkb3: 4zrk B:215-311 [274122]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
      3. 2062253Domain d4zrkc3: 4zrk C:215-313 [274125]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
      4. 2062254Domain d4zrkd3: 4zrk D:215-311 [274128]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
  5. 2062259Western clawed frog (Xenopus tropicalis) [TaxId:8364] [186773] (2 PDB entries)
    1. Domain for 1tj6:
    2. Domain for 1xod:
  6. 2273944Bos taurus [TaxId:9913] [317245] (4 PDB entries)
    1. Domain for 5he0:
    2. Domain for 5he2:
    3. Domain for 5he3:
    4. Domain for 5ukm:

More info for Protein automated matches from b.55.1.0: automated matches

Timeline for Protein automated matches from b.55.1.0: automated matches: