PDB entry 6kft
View 6kft on RCSB PDB site
Description: MVM NS2 mutant Nm42 in complex with CRM1-Ran-RanBP1
Class: transport protein
Keywords: transport protein, nuclear export, complex, mutant, inhibitor
Deposited on
2019-07-08, released
2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-06-16, with a file datestamp of
2021-06-11.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: GTP-binding nuclear protein ran
Species: Homo sapiens [TaxId:9606]
Gene: RAN, ARA24, OK/SW-cl.81
Database cross-references and differences (RAF-indexed):
- Uniprot P62826 (Start-234)
- engineered mutation (215)
Domains in SCOPe 2.08: d6kfta_ - Chain 'B':
Compound: Ran-specific GTPase-activating protein 1
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: YRB1, CST20, HTN1, SFO1, YDR002W, YD8119.08
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6kftb_ - Chain 'C':
Compound: Exportin-1
Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
Gene: CRM1, KAP124, XPO1, YGR218W, G8514
Database cross-references and differences (RAF-indexed):
- Uniprot P30822 (3-End)
- expression tag (1-2)
- engineered mutation (481)
- engineered mutation (483-485)
- engineered mutation (966)
- Chain 'D':
Compound: MVM NS2 mutant Nm42
Species: Minute virus of mice [TaxId:10794]
Gene: NS2
Database cross-references and differences (RAF-indexed):
- Heterogens: GTP, MG, EDO, GOL, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6kftA (A:)
gsshhhhhhssglvprgshmaaqgepqvqfklvlvgdggtgkttfvkrhltgefekkyva
tlgvevhplvfhtnrgpikfnvwdtagqekfgglrdgyyiqaqcaiimfdvtsrvtyknv
pnwhrdlvrvcenipivlcgnkvdikdrkvkaksivfhrkknlqyydisaksnynfekpf
lwlarkligdpnlefvampalappevvmdpalaaqaehdlevaqttalpdedddl
Sequence, based on observed residues (ATOM records): (download)
>6kftA (A:)
pqvqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpikfnvwdt
agqekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlcgnkvdi
kdrkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvampalappe
vvmdpalaaqaehdlevaqttalpdedddl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6kftB (B:)
ggsdihfepvvhlekvdvktmeedeevlykvraklfrfdadakewkergtgdckflknkk
tnkvrilmrrdktlkicanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairf
gskenadkfkeefekaqeinkka
Sequence, based on observed residues (ATOM records): (download)
>6kftB (B:)
hfepvvtmeedeevlykvraklfrfdadakewkergtgdckflknkktnkvrilmrrdkt
lkicanhiiapeytlkpnvgsdrswvyactadiaegeaeaftfairfgskenadkfkeef
ekaqeinkk
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.