Lineage for Protein: Green fluorescent protein, GFP

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2164731Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 2164732Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 2164733Family d.22.1.1: Fluorescent proteins [54512] (6 protein domains)
  6. 2164737Protein Green fluorescent protein, GFP [54513] (4 species)

Species:

  1. 2164738Clytia gregaria [TaxId:27801] [188531] (1 PDB entry)
  2. 2164740Galaxea fascicularis [TaxId:46745] [190027] (1 PDB entry)
  3. 2164743Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (175 PDB entries)
    Uniprot P42212
    1. Domains for 1b9c:
      1. 2164931Domain d1b9ca_: 1b9c A: [38358]
        mutant
      2. 2164932Domain d1b9cb_: 1b9c B: [38359]
        mutant
      3. 2164933Domain d1b9cc_: 1b9c C: [38360]
        mutant
      4. 2164934Domain d1b9cd_: 1b9c D: [38361]
        mutant
    2. Domain for 1bfp:
    3. Domain for 1c4f:
    4. Domain for 1cv7:
    5. Domain for 1ema:
    6. Domain for 1emb:
    7. Domains for 1emc:
      1. 2164945Domain d1emca_: 1emc A: [38352]
        mutant
      2. 2164946Domain d1emcb_: 1emc B: [38353]
        mutant
      3. 2164947Domain d1emcc_: 1emc C: [38354]
        mutant
      4. 2164948Domain d1emcd_: 1emc D: [38355]
        mutant
    8. Domain for 1eme:
    9. Domain for 1emf:
    10. Domain for 1emg:
    11. Domain for 1emk:
    12. Domain for 1eml:
    13. Domain for 1emm:
    14. Domain for 1f09:
    15. Domain for 1f0b:
    16. Domains for 1gfl:
      1. 2164893Domain d1gfla_: 1gfl A: [38341]
      2. 2164894Domain d1gflb_: 1gfl B: [38342]
    17. Domains for 1h6r:
      1. 2164795Domain d1h6ra_: 1h6r A: [65683]
        a redox sensitive variant
        complexed with cl
      2. 2164796Domain d1h6rb_: 1h6r B: [65684]
        a redox sensitive variant
        complexed with cl
      3. 2164797Domain d1h6rc_: 1h6r C: [65685]
        a redox sensitive variant
        complexed with cl
    18. Domains for 1hcj:
      1. 2164899Domain d1hcja_: 1hcj A: [65792]
        Photoproduct of the wild-type GFP
      2. 2164900Domain d1hcjb_: 1hcj B: [65793]
        Photoproduct of the wild-type GFP
      3. 2164901Domain d1hcjc_: 1hcj C: [65794]
        Photoproduct of the wild-type GFP
      4. 2164902Domain d1hcjd_: 1hcj D: [65795]
        Photoproduct of the wild-type GFP
    19. Domain for 1huy:
    20. Domain for 1jby:
    21. Domain for 1jbz:
      • 2164810Domain d1jbza_: 1jbz A: [77103]
        a dual-wavelength emission variant
        complexed with edo, mg
    22. Domains for 1jc0:
      1. 2164926Domain d1jc0a_: 1jc0 A: [90885]
      2. 2164927Domain d1jc0b_: 1jc0 B: [90886]
      3. 2164928Domain d1jc0c_: 1jc0 C: [90887]
    23. Domains for 1jc1:
      1. 2164916Domain d1jc1a_: 1jc1 A: [90888]
      2. 2164917Domain d1jc1b_: 1jc1 B: [90889]
      3. 2164918Domain d1jc1c_: 1jc1 C: [90890]
    24. Domains for 1kp5:
      1. 2164961Domain d1kp5a1: 1kp5 A:11-245 [72842]
        Other proteins in same PDB: d1kp5a2, d1kp5b2
        cyclic variant with linked natural termini
        complexed with so4
      2. 2164962Domain d1kp5b1: 1kp5 B:311-545 [72843]
        Other proteins in same PDB: d1kp5a2, d1kp5b2
        cyclic variant with linked natural termini
        complexed with so4
    25. Domain for 1kyp:
    26. Domain for 1kyr:
      • 2164783Domain d1kyra_: 1kyr A: [73287]
        Zn biosensor, Cu-bound form
        complexed with cu, mg
    27. Domain for 1kys:
    28. Domain for 1myw:
    29. Domain for 1oxd:
    30. Domain for 1oxe:
    31. Domain for 1oxf:
    32. Domain for 1q4a:
    33. Domain for 1q4b:
    34. Domain for 1q4c:
    35. Domain for 1q4d:
    36. Domain for 1q4e:
    37. Domain for 1q73:
    38. Domain for 1qxt:
    39. Domain for 1qy3:
    40. Domain for 1qyf:
    41. Domain for 1qyo:
    42. Domain for 1qyq:
    43. Domain for 1rm9:
    44. Domain for 1rmm:
    45. Domain for 1rmo:
    46. Domain for 1rmp:
    47. Domain for 1rrx:
    48. Domain for 1s6z:
    49. Domains for 1yfp:
      1. 2164937Domain d1yfpa_: 1yfp A: [38362]
        yellow-emission variant
      2. 2164938Domain d1yfpb_: 1yfp B: [38363]
        yellow-emission variant
    50. Domains for 2ah8:
      1. 2164941Domain d2ah8a_: 2ah8 A: [162802]
        automated match to d1jc1a_
        complexed with imd
      2. 2164942Domain d2ah8b_: 2ah8 B: [162803]
        automated match to d1jc1a_
        complexed with imd
    51. Domains for 2aha:
      1. 2164920Domain d2ahaa_: 2aha A: [162807]
        automated match to d1jc1a_
        complexed with so4
      2. 2164921Domain d2ahab_: 2aha B: [162808]
        automated match to d1jc1a_
        complexed with so4
    52. Domain for 2awj:
    53. Domain for 2awk:
    54. Domain for 2awl:
    55. Domain for 2awm:
    56. Domain for 2emd:
    57. Domain for 2emn:
    58. Domain for 2emo:
    59. Domain for 2fwq:
    60. Domain for 2fzu:
    61. Domain for 2g6e:
    62. Domain for 2h6v:
    63. Domain for 2h9w:
    64. Domain for 2hcg:
    65. Domain for 2hfc:
    66. Domain for 2hgd:
    67. Domain for 2hgy:
    68. Domain for 2hjo:
    69. Domain for 2hrs:
    70. Domain for 2o24:
    71. Domain for 2o29:
    72. Domain for 2o2b:
    73. Domains for 2okw:
      1. 2164882Domain d2okwa_: 2okw A: [166745]
        automated match to d1qyoa_
      2. 2164883Domain d2okwb_: 2okw B: [166746]
        automated match to d1qyoa_
      3. 2164884Domain d2okwc_: 2okw C: [166747]
        automated match to d1qyoa_
      4. 2164885Domain d2okwd_: 2okw D: [166748]
        automated match to d1qyoa_
      5. 2164886Domain d2okwe_: 2okw E: [166749]
        automated match to d1qyoa_
      6. 2164887Domain d2okwf_: 2okw F: [166750]
        automated match to d1qyoa_
    74. Domains for 2oky:
      1. 2164935Domain d2okya_: 2oky A: [166751]
        automated match to d1qyoa_
      2. 2164936Domain d2okyb_: 2oky B: [166752]
        automated match to d1qyoa_
    75. Domain for 2q6p:
    76. Domain for 2qrf:
    77. Domain for 2qt2:
    78. Domain for 2qu1:
    79. Domain for 2qz0:
    80. Domain for 2yfp:
    81. Domain for 3cb9:
    82. Domain for 3cbe:
    83. Domain for 3cd1:
    84. Domain for 3cd9:
    85. Domain for 3dpw:
    86. Domain for 3dpx:
    87. Domain for 3dpz:
    88. Domain for 3dq1:
    89. Domain for 3dq2:
    90. Domain for 3dq3:
    91. Domain for 3dq4:
    92. Domain for 3dq5:
    93. Domain for 3dq6:
    94. Domain for 3dq7:
    95. Domain for 3dq8:
    96. Domain for 3dq9:
    97. Domain for 3dqa:
    98. Domain for 3dqc:
    99. Domain for 3dqd:
    100. Domain for 3dqe:
    101. Domain for 3dqf:
    102. Domain for 3dqh:
    103. Domain for 3dqi:
    104. Domain for 3dqj:
    105. Domain for 3dqk:
    106. Domain for 3dql:
    107. Domain for 3dqm:
    108. Domain for 3dqn:
    109. Domain for 3dqo:
    110. Domain for 3dqu:
    111. Domain for 3g9a:
    112. Domain for 3gex:
    113. Domains for 3gj1:
      1. 2164855Domain d3gj1a_: 3gj1 A: [176677]
        automated match to d1q4aa_
        complexed with cl, so4
      2. 2164856Domain d3gj1b_: 3gj1 B: [176678]
        automated match to d1q4aa_
        complexed with cl, so4
      3. 2164857Domain d3gj1c_: 3gj1 C: [176679]
        automated match to d1q4aa_
        complexed with cl, so4
      4. 2164858Domain d3gj1d_: 3gj1 D: [176680]
        automated match to d1q4aa_
        complexed with cl, so4
    114. Domains for 3gj2:
      1. 2164867Domain d3gj2a_: 3gj2 A: [176681]
        Other proteins in same PDB: d3gj2b2
        automated match to d1q4aa_
        complexed with cl
      2. 2164868Domain d3gj2b1: 3gj2 B:1-230 [176682]
        Other proteins in same PDB: d3gj2b2
        automated match to d1q4aa_
        complexed with cl
      3. 2164869Domain d3gj2c_: 3gj2 C: [176683]
        Other proteins in same PDB: d3gj2b2
        automated match to d1q4aa_
        complexed with cl
      4. 2164870Domain d3gj2d_: 3gj2 D: [176684]
        Other proteins in same PDB: d3gj2b2
        automated match to d1q4aa_
        complexed with cl
    115. Domain for 3i19:
    116. Domains for 3k1k:
      1. 2164909Domain d3k1ka_: 3k1k A: [178951]
        Other proteins in same PDB: d3k1kc_, d3k1kd1, d3k1kd2
        automated match to d1qyoa_
      2. 2164910Domain d3k1kb_: 3k1k B: [178952]
        Other proteins in same PDB: d3k1kc_, d3k1kd1, d3k1kd2
        automated match to d1qyoa_
    117. Domain for 3la1:
    118. Domains for 3miq:
      1. 2164955Domain d3miqa_: 3miq A: [305949]
        Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
        automated match to d3st2a_
        complexed with ipa
      2. 2164956Domain d3miqb_: 3miq B: [305950]
        Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
        automated match to d3st2a_
        complexed with ipa
      3. 2164957Domain d3miqc_: 3miq C: [305951]
        Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
        automated match to d3st2a_
        complexed with ipa
      4. 2164958Domain d3miqd_: 3miq D: [305952]
        Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
        automated match to d3st2a_
        complexed with ipa
    119. Domains for 3ogo:
      1. 2164950Domain d3ogoa_: 3ogo A: [183011]
        Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
        automated match to d1qyoa_
        complexed with ipa
      2. 2164951Domain d3ogob_: 3ogo B: [183012]
        Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
        automated match to d1qyoa_
        complexed with ipa
      3. 2164952Domain d3ogoc_: 3ogo C: [183013]
        Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
        automated match to d1qyoa_
        complexed with ipa
      4. 2164953Domain d3ogod_: 3ogo D: [183014]
        Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
        automated match to d1qyoa_
        complexed with ipa
    120. Domain for 3sry:
    121. Domain for 3ss0:
    122. Domain for 3ssh:
    123. Domain for 3ssk:
    124. Domain for 3ssl:
    125. Domain for 3ssp:
    126. Domain for 3sst:
    127. Domain for 3ssv:
    128. Domain for 3ssy:
    129. Domain for 3st0:
    130. Domain for 3sv5:
    131. Domain for 3svb:
    132. Domain for 3svc:
    133. Domain for 3svd:
    134. Domain for 3sve:
    135. Domain for 3ufz:
    136. Domain for 3ug0:
    137. Domain for 3v3d:
    138. Domain for 3vht:
    139. Domain for 3w1c:
    140. Domain for 3w1d:
    141. Domains for 4en1:
      1. 2164820Domain d4en1a1: 4en1 A:2-238 [201876]
        Other proteins in same PDB: d4en1a2
        automated match to d4en1b_
        complexed with act, gol, peg, so4
      2. 2164821Domain d4en1b_: 4en1 B: [196885]
        Other proteins in same PDB: d4en1a2
        automated match to d3st3a_
        complexed with act, gol, peg, so4
    142. Domain for 4eul:
    143. Domain for 4ges:
    144. Domain for 4gf6:
    145. Domain for 4h47:
    146. Domain for 4h48:
    147. Domains for 4j88:
      1. 2164874Domain d4j88a_: 4j88 A: [223619]
        automated match to d3ztfa_
        complexed with edo, so4, trs
      2. 2164875Domain d4j88b_: 4j88 B: [223620]
        automated match to d3ztfa_
        complexed with edo, so4, trs
    148. Domains for 4j89:
      1. 2164896Domain d4j89a1: 4j89 A:2-231 [223621]
        Other proteins in same PDB: d4j89a2
        automated match to d3ztfa_
        complexed with edo, so4, trs
      2. 2164897Domain d4j89b_: 4j89 B: [223622]
        Other proteins in same PDB: d4j89a2
        automated match to d3ztfa_
        complexed with edo, so4, trs
    149. Domain for 4j8a:
    150. Domains for 4jfg:
      1. 2164975Domain d4jfga_: 4jfg A: [252921]
        automated match to d3ztfa_
        complexed with cs, hqy
      2. 2164976Domain d4jfgb_: 4jfg B: [252922]
        automated match to d3ztfa_
        complexed with cs, hqy
      3. 2164977Domain d4jfgc_: 4jfg C: [252923]
        automated match to d3ztfa_
        complexed with cs, hqy
      4. 2164978Domain d4jfgd_: 4jfg D: [252924]
        automated match to d3ztfa_
        complexed with cs, hqy
      5. 2164979Domain d4jfge_: 4jfg E: [252925]
        automated match to d3ztfa_
        complexed with cs, hqy
      6. 2164980Domain d4jfgf_: 4jfg F: [252926]
        automated match to d3ztfa_
        complexed with cs, hqy
      7. 2164981Domain d4jfgg_: 4jfg G: [252927]
        automated match to d3ztfa_
        complexed with cs, hqy
      8. 2164982Domain d4jfgh_: 4jfg H: [252928]
        automated match to d3ztfa_
        complexed with cs, hqy
    151. Domain for 4ka9:
    152. Domain for 4kag:
    153. Domain for 4kex:
    154. Domain for 4kw4:
    155. Domain for 4kw8:
    156. Domain for 4kw9:
    157. Domain for 4l12:
    158. Domain for 4l13:
    159. Domain for 4l1i:
    160. Domain for 4lqt:
    161. Domains for 4lqu:
      1. 2164838Domain d4lqua1: 4lqu A:2-228 [229863]
        Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
        automated match to d3st2a_
        mutant
      2. 2164839Domain d4lqub1: 4lqu B:2-231 [229862]
        Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
        automated match to d3st2a_
        mutant
      3. 2164840Domain d4lquc1: 4lqu C:2-230 [229861]
        Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
        automated match to d3st2a_
        mutant
      4. 2164841Domain d4lqud1: 4lqu D:2-230 [229864]
        Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
        automated match to d3st2a_
        mutant
    162. Domains for 4lw5:
      1. 2164963Domain d4lw5a_: 4lw5 A: [236607]
        automated match to d2h9wa_
      2. 2164964Domain d4lw5b_: 4lw5 B: [238430]
        automated match to d4lw5a_
      3. 2164965Domain d4lw5c_: 4lw5 C: [236608]
        automated match to d2h9wa_
      4. 2164966Domain d4lw5d_: 4lw5 D: [238431]
        automated match to d4lw5a_
      5. 2164967Domain d4lw5e_: 4lw5 E: [238429]
        automated match to d4lw5a_
    163. Domains for 4n3d:
      1. 2164793Domain d4n3da_: 4n3d A: [259230]
        automated match to d2h9wa_
        complexed with gol, k, po4
      2. 2164794Domain d4n3db_: 4n3d B: [259231]
        automated match to d2h9wa_
        complexed with gol, k, po4
    164. Domain for 4ndj:
    165. Domains for 4ogs:
      1. 2164929Domain d4ogsa_: 4ogs A: [257258]
        automated match to d3st2a_
        complexed with cl
      2. 2164930Domain d4ogsb_: 4ogs B: [263286]
        automated match to d3st2a_
        complexed with cl
    166. Domains for 4orn:
      1. 2164903Domain d4orna_: 4orn A: [271183]
        automated match to d3ztfa_
        complexed with cl, mes, so4
      2. 2164904Domain d4ornb_: 4orn B: [271182]
        automated match to d3ztfa_
        complexed with cl, mes, so4
    167. Domain for 4p1q:
    168. Domain for 4xov:
    169. Domain for 4xow:
    170. Domains for 5bt0:
      1. 2276174Domain d5bt0a1: 5bt0 A:3-234 [319475]
        Other proteins in same PDB: d5bt0a2, d5bt0b2
        automated match to d2hcga_
        complexed with so4
      2. 2276192Domain d5bt0b1: 5bt0 B:3-234 [319493]
        Other proteins in same PDB: d5bt0a2, d5bt0b2
        automated match to d2hcga_
        complexed with so4
    171. Domain for 5dpg:
    172. Domains for 5dph:
      1. 2164850Domain d5dpha_: 5dph A: [280334]
        automated match to d3st2a_
        complexed with co2, mg; mutant
      2. 2164851Domain d5dphb_: 5dph B: [280333]
        automated match to d3st2a_
        complexed with co2, mg; mutant
    173. Domains for 5dpi:
      1. 2164969Domain d5dpia_: 5dpi A: [280326]
        automated match to d3st2a_
        mutant
      2. 2164970Domain d5dpib_: 5dpi B: [280324]
        automated match to d3st2a_
        mutant
      3. 2164971Domain d5dpic_: 5dpi C: [280329]
        automated match to d3st2a_
        mutant
      4. 2164972Domain d5dpid_: 5dpi D: [280330]
        automated match to d3st2a_
        mutant
      5. 2164973Domain d5dpie_: 5dpi E: [280331]
        automated match to d3st2a_
        mutant
      6. 2164974Domain d5dpif_: 5dpi F: [280332]
        automated match to d3st2a_
        mutant
    174. Domains for 5ehu:
      1. 2164848Domain d5ehua_: 5ehu A: [280018]
        automated match to d2b3pa_
        mutant
      2. 2164849Domain d5ehub_: 5ehu B: [280017]
        automated match to d2b3pa_
        mutant
    175. Domains for 5hzo:
      1. 2272031Domain d5hzob_: 5hzo B: [315332]
        automated match to d3srya_
        complexed with mlt, umq; mutant
      2. 2272058Domain d5hzoa_: 5hzo A: [315359]
        automated match to d3srya_
        complexed with mlt, umq; mutant
  4. 2164983Renilla reniformis [TaxId:6136] [160126] (2 PDB entries)
    Uniprot Q963I9 7-226
    1. Domains for 2psl:
      1. 2164988Domain d2psla_: 2psl A: [304374]
        automated match to d2vzxc_
      2. 2164989Domain d2pslb_: 2psl B: [304375]
        automated match to d2vzxc_
      3. 2164990Domain d2pslc_: 2psl C: [304376]
        automated match to d2vzxc_
      4. 2164991Domain d2psld_: 2psl D: [304377]
        automated match to d2vzxc_
    2. Domains for 2rh7:
      1. 2164984Domain d2rh7a1: 2rh7 A:7-226 [152030]
      2. 2164985Domain d2rh7b_: 2rh7 B: [152031]
        automated match to d1mova_
      3. 2164986Domain d2rh7c_: 2rh7 C: [152032]
        automated match to d1mova_
      4. 2164987Domain d2rh7d_: 2rh7 D: [152033]
        automated match to d1mova_

More info for Protein Green fluorescent protein, GFP from d.22.1.1: Fluorescent proteins

Timeline for Protein Green fluorescent protein, GFP from d.22.1.1: Fluorescent proteins: