PDB entry 4lw5

View 4lw5 on RCSB PDB site
Description: Crystal structure of all-trans green fluorescent protein
Class: fluorescent protein
Keywords: 11-stranded beta barrel, FLUORESCENT PROTEIN
Deposited on 2013-07-26, released 2014-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-04-09, with a file datestamp of 2014-04-04.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.218
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered mutation (30)
      • engineered mutation (39)
      • engineered mutation (64)
      • chromophore (66)
      • engineered mutation (80)
      • insertion (88-89)
      • engineered mutation (90-92)
      • engineered mutation (94-96)
      • engineered mutation (101)
      • engineered mutation (107)
      • engineered mutation (113)
      • engineered mutation (130)
      • engineered mutation (147)
      • engineered mutation (155)
      • engineered mutation (165)
      • engineered mutation (168-169)
      • engineered mutation (173)
      • engineered mutation (207-208)
    Domains in SCOPe 2.08: d4lw5a_
  • Chain 'B':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered mutation (30)
      • engineered mutation (39)
      • engineered mutation (64)
      • chromophore (66)
      • engineered mutation (80)
      • insertion (88-89)
      • engineered mutation (90-92)
      • engineered mutation (94-96)
      • engineered mutation (101)
      • engineered mutation (107)
      • engineered mutation (113)
      • engineered mutation (130)
      • engineered mutation (147)
      • engineered mutation (155)
      • engineered mutation (165)
      • engineered mutation (168-169)
      • engineered mutation (173)
      • engineered mutation (207-208)
    Domains in SCOPe 2.08: d4lw5b_
  • Chain 'C':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered mutation (30)
      • engineered mutation (39)
      • engineered mutation (64)
      • chromophore (66)
      • engineered mutation (80)
      • insertion (88-89)
      • engineered mutation (90-92)
      • engineered mutation (94-96)
      • engineered mutation (101)
      • engineered mutation (107)
      • engineered mutation (113)
      • engineered mutation (130)
      • engineered mutation (147)
      • engineered mutation (155)
      • engineered mutation (165)
      • engineered mutation (168-169)
      • engineered mutation (173)
      • engineered mutation (207-208)
    Domains in SCOPe 2.08: d4lw5c_
  • Chain 'D':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered mutation (30)
      • engineered mutation (39)
      • engineered mutation (64)
      • chromophore (66)
      • engineered mutation (80)
      • insertion (88-89)
      • engineered mutation (90-92)
      • engineered mutation (94-96)
      • engineered mutation (101)
      • engineered mutation (107)
      • engineered mutation (113)
      • engineered mutation (130)
      • engineered mutation (147)
      • engineered mutation (155)
      • engineered mutation (165)
      • engineered mutation (168-169)
      • engineered mutation (173)
      • engineered mutation (207-208)
    Domains in SCOPe 2.08: d4lw5d_
  • Chain 'E':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212
      • engineered mutation (30)
      • engineered mutation (39)
      • engineered mutation (64)
      • chromophore (66)
      • engineered mutation (80)
      • insertion (88-89)
      • engineered mutation (90-92)
      • engineered mutation (94-96)
      • engineered mutation (101)
      • engineered mutation (107)
      • engineered mutation (113)
      • engineered mutation (130)
      • engineered mutation (147)
      • engineered mutation (155)
      • engineered mutation (165)
      • engineered mutation (168-169)
      • engineered mutation (173)
      • engineered mutation (207-208)
    Domains in SCOPe 2.08: d4lw5e_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4lw5A (A:)
maskgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwpt
lvttlgygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegd
tlvnrielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvq
ladhyqqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagithgmdely
k

    Sequence, based on observed residues (ATOM records): (download) 
    >4lw5A (A:)
eelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlvttl
gygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegdtlvnr
ielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvqladhy
qqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagit

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4lw5B (B:)
maskgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwpt
lvttlgygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegd
tlvnrielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvq
ladhyqqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagithgmdely
k

    Sequence, based on observed residues (ATOM records): (download) 
    >4lw5B (B:)
eelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlvttl
gygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegdtlvnr
ielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvqladhy
qqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagith

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4lw5C (C:)
maskgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwpt
lvttlgygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegd
tlvnrielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvq
ladhyqqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagithgmdely
k

    Sequence, based on observed residues (ATOM records): (download) 
    >4lw5C (C:)
geelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlvtt
lgygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegdtlvn
rielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvqladh
yqqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4lw5D (D:)
maskgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwpt
lvttlgygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegd
tlvnrielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvq
ladhyqqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagithgmdely
k

    Sequence, based on observed residues (ATOM records): (download) 
    >4lw5D (D:)
elftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlvttlg
ygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegdtlvnri
elkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvqladhyq
qntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagit

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4lw5E (E:)
maskgeelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwpt
lvttlgygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegd
tlvnrielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvq
ladhyqqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagithgmdely
k

    Sequence, based on observed residues (ATOM records): (download) 
    >4lw5E (E:)
eelftgvvpilveldgdvnghkfsvrgegegdatigkltlkficttgklpvpwptlvttl
gygvqcfsrypdhmkrhdffksaisngdgfinertisfkddgkyktravvkfegdtlvnr
ielkgtdfkedgnilghkleynfnshnvyitadkqkngikanftvrhnvedgsvqladhy
qqntpigdgpvllpdnhylstqtvlskdpnekrdhmvllefvtaagit