Lineage for Family d.22.1.1: Fluorescent proteins

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)

Proteins:

  1. GFP-like non-fluorescent chromoprotein FP595 [117863] (1 species)
  2. Green fluorescent protein, GFP [54513] (6 species)
    1. Species Clytia gregaria [TaxId:27801] [188531] (1 PDB entry)
    2. Species Galaxea fascicularis [TaxId:46745] [190027] (1 PDB entry)
    3. Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (282 PDB entries)
      Uniprot P42212
    4. Species Nicotiana benthamiana [TaxId:4100] [383320] (1 PDB entry)
    5. Species Renilla reniformis [TaxId:6136] [160126] (2 PDB entries)
      Uniprot Q963I9 7-226
    6. Species Aequorea macrodactyla [TaxId:147615] [419785] (1 PDB entry)
  3. Pocilloporin pigment Rtms5 [89866] (1 species)
  4. Red fluorescent protein (fp583 or dsred(clontech)) [54515] (1 species)
  5. Red fluorescent protein fp61 [102854] (1 species)
  6. automated matches [190406] (19 species)
    not a true protein
    1. Species Aequorea coerulescens [TaxId:210840] [189267] (7 PDB entries)
    2. Species Anaplasma marginale [TaxId:770] [277056] (3 PDB entries)
    3. Species Artificial gene [TaxId:32630] [189424] (7 PDB entries)
    4. Species Cfp marker [TaxId:141850] [276575] (1 PDB entry)
    5. Species Cnidopus japonicus [TaxId:380086] [188533] (2 PDB entries)
    6. Species Coral (Discosoma sp.) [TaxId:86600] [188539] (22 PDB entries)
    7. Species Coral (Montipora efflorescens) [TaxId:105610] [188535] (3 PDB entries)
    8. Species Dendronephthya sp. [TaxId:191210] [188919] (1 PDB entry)
    9. Species Discosoma sp. [TaxId:301246] [188540] (5 PDB entries)
    10. Species Discosoma striata [188537] (1 PDB entry)
    11. Species Escherichia coli [TaxId:562] [317895] (1 PDB entry)
    12. Species Heteractis crispa [TaxId:175771] [188161] (2 PDB entries)
    13. Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (56 PDB entries)
    14. Species Montipora sp. [TaxId:321802] [189025] (4 PDB entries)
    15. Species Recombinant vesicular stomatitis indiana virus rvsv-g/gfp [TaxId:582817] [407608] (1 PDB entry)
    16. Species Sea anemone (Anemonia sulcata) [TaxId:6108] [188527] (2 PDB entries)
    17. Species Sea anemone (Entacmaea quadricolor) [TaxId:6118] [188538] (24 PDB entries)
    18. Species Stichodactyla haddoni [TaxId:475174] [366510] (2 PDB entries)
    19. Species Vaccinia virus [TaxId:10245] [342120] (1 PDB entry)

More info for Family d.22.1.1: Fluorescent proteins

Timeline for Family d.22.1.1: Fluorescent proteins: