Lineage for Species: Jellyfish (Aequorea victoria) [TaxId: 6100]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2164731Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 2164732Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 2164733Family d.22.1.1: Fluorescent proteins [54512] (6 protein domains)
  6. 2164737Protein Green fluorescent protein, GFP [54513] (4 species)
  7. 2164743Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (175 PDB entries)
    Uniprot P42212

PDB entries in Species: Jellyfish (Aequorea victoria) [TaxId: 6100]:

  1. Domain(s) for 1b9c:
    1. 2164931Domain d1b9ca_: 1b9c A: [38358]
      mutant
    2. 2164932Domain d1b9cb_: 1b9c B: [38359]
      mutant
    3. 2164933Domain d1b9cc_: 1b9c C: [38360]
      mutant
    4. 2164934Domain d1b9cd_: 1b9c D: [38361]
      mutant
  2. Domain(s) for 1bfp:
  3. Domain(s) for 1c4f:
  4. Domain(s) for 1cv7:
  5. Domain(s) for 1ema:
  6. Domain(s) for 1emb:
  7. Domain(s) for 1emc:
    1. 2164945Domain d1emca_: 1emc A: [38352]
      mutant
    2. 2164946Domain d1emcb_: 1emc B: [38353]
      mutant
    3. 2164947Domain d1emcc_: 1emc C: [38354]
      mutant
    4. 2164948Domain d1emcd_: 1emc D: [38355]
      mutant
  8. Domain(s) for 1eme:
  9. Domain(s) for 1emf:
  10. Domain(s) for 1emg:
  11. Domain(s) for 1emk:
  12. Domain(s) for 1eml:
  13. Domain(s) for 1emm:
  14. Domain(s) for 1f09:
  15. Domain(s) for 1f0b:
  16. Domain(s) for 1gfl:
    1. 2164893Domain d1gfla_: 1gfl A: [38341]
    2. 2164894Domain d1gflb_: 1gfl B: [38342]
  17. Domain(s) for 1h6r:
    1. 2164795Domain d1h6ra_: 1h6r A: [65683]
      a redox sensitive variant
      complexed with cl
    2. 2164796Domain d1h6rb_: 1h6r B: [65684]
      a redox sensitive variant
      complexed with cl
    3. 2164797Domain d1h6rc_: 1h6r C: [65685]
      a redox sensitive variant
      complexed with cl
  18. Domain(s) for 1hcj:
    1. 2164899Domain d1hcja_: 1hcj A: [65792]
      Photoproduct of the wild-type GFP
    2. 2164900Domain d1hcjb_: 1hcj B: [65793]
      Photoproduct of the wild-type GFP
    3. 2164901Domain d1hcjc_: 1hcj C: [65794]
      Photoproduct of the wild-type GFP
    4. 2164902Domain d1hcjd_: 1hcj D: [65795]
      Photoproduct of the wild-type GFP
  19. Domain(s) for 1huy:
  20. Domain(s) for 1jby:
  21. Domain(s) for 1jbz:
    • 2164810Domain d1jbza_: 1jbz A: [77103]
      a dual-wavelength emission variant
      complexed with edo, mg
  22. Domain(s) for 1jc0:
    1. 2164926Domain d1jc0a_: 1jc0 A: [90885]
    2. 2164927Domain d1jc0b_: 1jc0 B: [90886]
    3. 2164928Domain d1jc0c_: 1jc0 C: [90887]
  23. Domain(s) for 1jc1:
    1. 2164916Domain d1jc1a_: 1jc1 A: [90888]
    2. 2164917Domain d1jc1b_: 1jc1 B: [90889]
    3. 2164918Domain d1jc1c_: 1jc1 C: [90890]
  24. Domain(s) for 1kp5:
    1. 2164961Domain d1kp5a1: 1kp5 A:11-245 [72842]
      Other proteins in same PDB: d1kp5a2, d1kp5b2
      cyclic variant with linked natural termini
      complexed with so4
    2. 2164962Domain d1kp5b1: 1kp5 B:311-545 [72843]
      Other proteins in same PDB: d1kp5a2, d1kp5b2
      cyclic variant with linked natural termini
      complexed with so4
  25. Domain(s) for 1kyp:
  26. Domain(s) for 1kyr:
    • 2164783Domain d1kyra_: 1kyr A: [73287]
      Zn biosensor, Cu-bound form
      complexed with cu, mg
  27. Domain(s) for 1kys:
  28. Domain(s) for 1myw:
  29. Domain(s) for 1oxd:
  30. Domain(s) for 1oxe:
  31. Domain(s) for 1oxf:
  32. Domain(s) for 1q4a:
  33. Domain(s) for 1q4b:
  34. Domain(s) for 1q4c:
  35. Domain(s) for 1q4d:
  36. Domain(s) for 1q4e:
  37. Domain(s) for 1q73:
  38. Domain(s) for 1qxt:
  39. Domain(s) for 1qy3:
  40. Domain(s) for 1qyf:
  41. Domain(s) for 1qyo:
  42. Domain(s) for 1qyq:
  43. Domain(s) for 1rm9:
  44. Domain(s) for 1rmm:
  45. Domain(s) for 1rmo:
  46. Domain(s) for 1rmp:
  47. Domain(s) for 1rrx:
  48. Domain(s) for 1s6z:
  49. Domain(s) for 1yfp:
    1. 2164937Domain d1yfpa_: 1yfp A: [38362]
      yellow-emission variant
    2. 2164938Domain d1yfpb_: 1yfp B: [38363]
      yellow-emission variant
  50. Domain(s) for 2ah8:
    1. 2164941Domain d2ah8a_: 2ah8 A: [162802]
      automated match to d1jc1a_
      complexed with imd
    2. 2164942Domain d2ah8b_: 2ah8 B: [162803]
      automated match to d1jc1a_
      complexed with imd
  51. Domain(s) for 2aha:
    1. 2164920Domain d2ahaa_: 2aha A: [162807]
      automated match to d1jc1a_
      complexed with so4
    2. 2164921Domain d2ahab_: 2aha B: [162808]
      automated match to d1jc1a_
      complexed with so4
  52. Domain(s) for 2awj:
  53. Domain(s) for 2awk:
  54. Domain(s) for 2awl:
  55. Domain(s) for 2awm:
  56. Domain(s) for 2emd:
  57. Domain(s) for 2emn:
  58. Domain(s) for 2emo:
  59. Domain(s) for 2fwq:
  60. Domain(s) for 2fzu:
  61. Domain(s) for 2g6e:
  62. Domain(s) for 2h6v:
  63. Domain(s) for 2h9w:
  64. Domain(s) for 2hcg:
  65. Domain(s) for 2hfc:
  66. Domain(s) for 2hgd:
  67. Domain(s) for 2hgy:
  68. Domain(s) for 2hjo:
  69. Domain(s) for 2hrs:
  70. Domain(s) for 2o24:
  71. Domain(s) for 2o29:
  72. Domain(s) for 2o2b:
  73. Domain(s) for 2okw:
    1. 2164882Domain d2okwa_: 2okw A: [166745]
      automated match to d1qyoa_
    2. 2164883Domain d2okwb_: 2okw B: [166746]
      automated match to d1qyoa_
    3. 2164884Domain d2okwc_: 2okw C: [166747]
      automated match to d1qyoa_
    4. 2164885Domain d2okwd_: 2okw D: [166748]
      automated match to d1qyoa_
    5. 2164886Domain d2okwe_: 2okw E: [166749]
      automated match to d1qyoa_
    6. 2164887Domain d2okwf_: 2okw F: [166750]
      automated match to d1qyoa_
  74. Domain(s) for 2oky:
    1. 2164935Domain d2okya_: 2oky A: [166751]
      automated match to d1qyoa_
    2. 2164936Domain d2okyb_: 2oky B: [166752]
      automated match to d1qyoa_
  75. Domain(s) for 2q6p:
  76. Domain(s) for 2qrf:
  77. Domain(s) for 2qt2:
  78. Domain(s) for 2qu1:
  79. Domain(s) for 2qz0:
  80. Domain(s) for 2yfp:
  81. Domain(s) for 3cb9:
  82. Domain(s) for 3cbe:
  83. Domain(s) for 3cd1:
  84. Domain(s) for 3cd9:
  85. Domain(s) for 3dpw:
  86. Domain(s) for 3dpx:
  87. Domain(s) for 3dpz:
  88. Domain(s) for 3dq1:
  89. Domain(s) for 3dq2:
  90. Domain(s) for 3dq3:
  91. Domain(s) for 3dq4:
  92. Domain(s) for 3dq5:
  93. Domain(s) for 3dq6:
  94. Domain(s) for 3dq7:
  95. Domain(s) for 3dq8:
  96. Domain(s) for 3dq9:
  97. Domain(s) for 3dqa:
  98. Domain(s) for 3dqc:
  99. Domain(s) for 3dqd:
  100. Domain(s) for 3dqe:
  101. Domain(s) for 3dqf:
  102. Domain(s) for 3dqh:
  103. Domain(s) for 3dqi:
  104. Domain(s) for 3dqj:
  105. Domain(s) for 3dqk:
  106. Domain(s) for 3dql:
  107. Domain(s) for 3dqm:
  108. Domain(s) for 3dqn:
  109. Domain(s) for 3dqo:
  110. Domain(s) for 3dqu:
  111. Domain(s) for 3g9a:
  112. Domain(s) for 3gex:
  113. Domain(s) for 3gj1:
    1. 2164855Domain d3gj1a_: 3gj1 A: [176677]
      automated match to d1q4aa_
      complexed with cl, so4
    2. 2164856Domain d3gj1b_: 3gj1 B: [176678]
      automated match to d1q4aa_
      complexed with cl, so4
    3. 2164857Domain d3gj1c_: 3gj1 C: [176679]
      automated match to d1q4aa_
      complexed with cl, so4
    4. 2164858Domain d3gj1d_: 3gj1 D: [176680]
      automated match to d1q4aa_
      complexed with cl, so4
  114. Domain(s) for 3gj2:
    1. 2164867Domain d3gj2a_: 3gj2 A: [176681]
      Other proteins in same PDB: d3gj2b2
      automated match to d1q4aa_
      complexed with cl
    2. 2164868Domain d3gj2b1: 3gj2 B:1-230 [176682]
      Other proteins in same PDB: d3gj2b2
      automated match to d1q4aa_
      complexed with cl
    3. 2164869Domain d3gj2c_: 3gj2 C: [176683]
      Other proteins in same PDB: d3gj2b2
      automated match to d1q4aa_
      complexed with cl
    4. 2164870Domain d3gj2d_: 3gj2 D: [176684]
      Other proteins in same PDB: d3gj2b2
      automated match to d1q4aa_
      complexed with cl
  115. Domain(s) for 3i19:
  116. Domain(s) for 3k1k:
    1. 2164909Domain d3k1ka_: 3k1k A: [178951]
      Other proteins in same PDB: d3k1kc_, d3k1kd1, d3k1kd2
      automated match to d1qyoa_
    2. 2164910Domain d3k1kb_: 3k1k B: [178952]
      Other proteins in same PDB: d3k1kc_, d3k1kd1, d3k1kd2
      automated match to d1qyoa_
  117. Domain(s) for 3la1:
  118. Domain(s) for 3miq:
    1. 2164955Domain d3miqa_: 3miq A: [305949]
      Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
      automated match to d3st2a_
      complexed with ipa
    2. 2164956Domain d3miqb_: 3miq B: [305950]
      Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
      automated match to d3st2a_
      complexed with ipa
    3. 2164957Domain d3miqc_: 3miq C: [305951]
      Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
      automated match to d3st2a_
      complexed with ipa
    4. 2164958Domain d3miqd_: 3miq D: [305952]
      Other proteins in same PDB: d3miqe_, d3miqf_, d3miqg_, d3miqh1, d3miqh2
      automated match to d3st2a_
      complexed with ipa
  119. Domain(s) for 3ogo:
    1. 2164950Domain d3ogoa_: 3ogo A: [183011]
      Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
      automated match to d1qyoa_
      complexed with ipa
    2. 2164951Domain d3ogob_: 3ogo B: [183012]
      Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
      automated match to d1qyoa_
      complexed with ipa
    3. 2164952Domain d3ogoc_: 3ogo C: [183013]
      Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
      automated match to d1qyoa_
      complexed with ipa
    4. 2164953Domain d3ogod_: 3ogo D: [183014]
      Other proteins in same PDB: d3ogoe_, d3ogof_, d3ogog_, d3ogoh1, d3ogoh2
      automated match to d1qyoa_
      complexed with ipa
  120. Domain(s) for 3sry:
  121. Domain(s) for 3ss0:
  122. Domain(s) for 3ssh:
  123. Domain(s) for 3ssk:
  124. Domain(s) for 3ssl:
  125. Domain(s) for 3ssp:
  126. Domain(s) for 3sst:
  127. Domain(s) for 3ssv:
  128. Domain(s) for 3ssy:
  129. Domain(s) for 3st0:
  130. Domain(s) for 3sv5:
  131. Domain(s) for 3svb:
  132. Domain(s) for 3svc:
  133. Domain(s) for 3svd:
  134. Domain(s) for 3sve:
  135. Domain(s) for 3ufz:
  136. Domain(s) for 3ug0:
  137. Domain(s) for 3v3d:
  138. Domain(s) for 3vht:
  139. Domain(s) for 3w1c:
  140. Domain(s) for 3w1d:
  141. Domain(s) for 4en1:
    1. 2164820Domain d4en1a1: 4en1 A:2-238 [201876]
      Other proteins in same PDB: d4en1a2
      automated match to d4en1b_
      complexed with act, gol, peg, so4
    2. 2164821Domain d4en1b_: 4en1 B: [196885]
      Other proteins in same PDB: d4en1a2
      automated match to d3st3a_
      complexed with act, gol, peg, so4
  142. Domain(s) for 4eul:
  143. Domain(s) for 4ges:
  144. Domain(s) for 4gf6:
  145. Domain(s) for 4h47:
  146. Domain(s) for 4h48:
  147. Domain(s) for 4j88:
    1. 2164874Domain d4j88a_: 4j88 A: [223619]
      automated match to d3ztfa_
      complexed with edo, so4, trs
    2. 2164875Domain d4j88b_: 4j88 B: [223620]
      automated match to d3ztfa_
      complexed with edo, so4, trs
  148. Domain(s) for 4j89:
    1. 2164896Domain d4j89a1: 4j89 A:2-231 [223621]
      Other proteins in same PDB: d4j89a2
      automated match to d3ztfa_
      complexed with edo, so4, trs
    2. 2164897Domain d4j89b_: 4j89 B: [223622]
      Other proteins in same PDB: d4j89a2
      automated match to d3ztfa_
      complexed with edo, so4, trs
  149. Domain(s) for 4j8a:
  150. Domain(s) for 4jfg:
    1. 2164975Domain d4jfga_: 4jfg A: [252921]
      automated match to d3ztfa_
      complexed with cs, hqy
    2. 2164976Domain d4jfgb_: 4jfg B: [252922]
      automated match to d3ztfa_
      complexed with cs, hqy
    3. 2164977Domain d4jfgc_: 4jfg C: [252923]
      automated match to d3ztfa_
      complexed with cs, hqy
    4. 2164978Domain d4jfgd_: 4jfg D: [252924]
      automated match to d3ztfa_
      complexed with cs, hqy
    5. 2164979Domain d4jfge_: 4jfg E: [252925]
      automated match to d3ztfa_
      complexed with cs, hqy
    6. 2164980Domain d4jfgf_: 4jfg F: [252926]
      automated match to d3ztfa_
      complexed with cs, hqy
    7. 2164981Domain d4jfgg_: 4jfg G: [252927]
      automated match to d3ztfa_
      complexed with cs, hqy
    8. 2164982Domain d4jfgh_: 4jfg H: [252928]
      automated match to d3ztfa_
      complexed with cs, hqy
  151. Domain(s) for 4ka9:
  152. Domain(s) for 4kag:
  153. Domain(s) for 4kex:
  154. Domain(s) for 4kw4:
  155. Domain(s) for 4kw8:
  156. Domain(s) for 4kw9:
  157. Domain(s) for 4l12:
  158. Domain(s) for 4l13:
  159. Domain(s) for 4l1i:
  160. Domain(s) for 4lqt:
  161. Domain(s) for 4lqu:
    1. 2164838Domain d4lqua1: 4lqu A:2-228 [229863]
      Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
      automated match to d3st2a_
      mutant
    2. 2164839Domain d4lqub1: 4lqu B:2-231 [229862]
      Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
      automated match to d3st2a_
      mutant
    3. 2164840Domain d4lquc1: 4lqu C:2-230 [229861]
      Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
      automated match to d3st2a_
      mutant
    4. 2164841Domain d4lqud1: 4lqu D:2-230 [229864]
      Other proteins in same PDB: d4lqua2, d4lqub2, d4lquc2, d4lqud2
      automated match to d3st2a_
      mutant
  162. Domain(s) for 4lw5:
    1. 2164963Domain d4lw5a_: 4lw5 A: [236607]
      automated match to d2h9wa_
    2. 2164964Domain d4lw5b_: 4lw5 B: [238430]
      automated match to d4lw5a_
    3. 2164965Domain d4lw5c_: 4lw5 C: [236608]
      automated match to d2h9wa_
    4. 2164966Domain d4lw5d_: 4lw5 D: [238431]
      automated match to d4lw5a_
    5. 2164967Domain d4lw5e_: 4lw5 E: [238429]
      automated match to d4lw5a_
  163. Domain(s) for 4n3d:
    1. 2164793Domain d4n3da_: 4n3d A: [259230]
      automated match to d2h9wa_
      complexed with gol, k, po4
    2. 2164794Domain d4n3db_: 4n3d B: [259231]
      automated match to d2h9wa_
      complexed with gol, k, po4
  164. Domain(s) for 4ndj:
  165. Domain(s) for 4ogs:
    1. 2164929Domain d4ogsa_: 4ogs A: [257258]
      automated match to d3st2a_
      complexed with cl
    2. 2164930Domain d4ogsb_: 4ogs B: [263286]
      automated match to d3st2a_
      complexed with cl
  166. Domain(s) for 4orn:
    1. 2164903Domain d4orna_: 4orn A: [271183]
      automated match to d3ztfa_
      complexed with cl, mes, so4
    2. 2164904Domain d4ornb_: 4orn B: [271182]
      automated match to d3ztfa_
      complexed with cl, mes, so4
  167. Domain(s) for 4p1q:
  168. Domain(s) for 4xov:
  169. Domain(s) for 4xow:
  170. Domain(s) for 5bt0:
    1. 2276174Domain d5bt0a1: 5bt0 A:3-234 [319475]
      Other proteins in same PDB: d5bt0a2, d5bt0b2
      automated match to d2hcga_
      complexed with so4
    2. 2276192Domain d5bt0b1: 5bt0 B:3-234 [319493]
      Other proteins in same PDB: d5bt0a2, d5bt0b2
      automated match to d2hcga_
      complexed with so4
  171. Domain(s) for 5dpg:
  172. Domain(s) for 5dph:
    1. 2164850Domain d5dpha_: 5dph A: [280334]
      automated match to d3st2a_
      complexed with co2, mg; mutant
    2. 2164851Domain d5dphb_: 5dph B: [280333]
      automated match to d3st2a_
      complexed with co2, mg; mutant
  173. Domain(s) for 5dpi:
    1. 2164969Domain d5dpia_: 5dpi A: [280326]
      automated match to d3st2a_
      mutant
    2. 2164970Domain d5dpib_: 5dpi B: [280324]
      automated match to d3st2a_
      mutant
    3. 2164971Domain d5dpic_: 5dpi C: [280329]
      automated match to d3st2a_
      mutant
    4. 2164972Domain d5dpid_: 5dpi D: [280330]
      automated match to d3st2a_
      mutant
    5. 2164973Domain d5dpie_: 5dpi E: [280331]
      automated match to d3st2a_
      mutant
    6. 2164974Domain d5dpif_: 5dpi F: [280332]
      automated match to d3st2a_
      mutant
  174. Domain(s) for 5ehu:
    1. 2164848Domain d5ehua_: 5ehu A: [280018]
      automated match to d2b3pa_
      mutant
    2. 2164849Domain d5ehub_: 5ehu B: [280017]
      automated match to d2b3pa_
      mutant
  175. Domain(s) for 5hzo:
    1. 2272031Domain d5hzob_: 5hzo B: [315332]
      automated match to d3srya_
      complexed with mlt, umq; mutant
    2. 2272058Domain d5hzoa_: 5hzo A: [315359]
      automated match to d3srya_
      complexed with mlt, umq; mutant

More info for Species Jellyfish (Aequorea victoria) [TaxId:6100] from d.22.1.1 Green fluorescent protein, GFP

Timeline for Species Jellyfish (Aequorea victoria) [TaxId:6100] from d.22.1.1 Green fluorescent protein, GFP: