PDB entry 4ndj

View 4ndj on RCSB PDB site
Description: Crystal Structure of a computational designed engrailed homeodomain variant fused with YFP
Class: fluorescent protein, de novo protein
Keywords: helix-turn-helix, fluorescent protein, de novo protein
Deposited on 2013-10-26, released 2014-11-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-18, with a file datestamp of 2017-10-13.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein, chimeric construct,GFP-like fluorescent chromoprotein FP506, related
    Species: Eimeria acervulina [TaxId:5801]
    Gene: EAH_00062270
    Database cross-references and differences (RAF-indexed):
    • PDB 4NDJ (Start-51)
    • Uniprot U6GSR1 (52-End)
      • see remark 999 (98)
      • see remark 999 (116)
      • chromophore (117)
      • see remark 999 (121)
      • see remark 999 (205)
      • see remark 999 (215)
      • see remark 999 (227)
      • see remark 999 (258)
    Domains in SCOPe 2.08: d4ndja1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ndjA (A:)
mtefseeqkkaldlafyfdrrlteewrrylsqrlglneeqierwfrrkeqqimvskgeel
ftgvvpilveldgdvnghkfsvsgegegdatygkltlklicttgklpvpwptlvttlgyg
lqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnrielkg
idfkedgnilghkleynynshnvyitadkqkngikanfkirhniedggvqladhyqqntp
igdgpvllpdnhylsyqsklskdpnekrdhmvllefvtaagitlgmdelykgghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4ndjA (A:)
tefseeqkkaldlafyfdrrlteewrrylsqrlglneeqierwfrrkeqqimvskgeelf
tgvvpilveldgdvnghkfsvsgegegdatygkltlklicttgklpvpwptlvttlgygl
qcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvnrielkgi
dfkedgnilghkleynynshnvyitadkqkngikanfkirhniedggvqladhyqqntpi
gdgpvllpdnhylsyqsklskdpnekrdhmvllefvtaagit