PDB entry 3dqm

View 3dqm on RCSB PDB site
Description: Structure of the Yellow Fluorescent Protein Citrine Frozen at 750 Atmospheres: Structure 4 in a Series of 26 High Pressure Structures
Class: luminescent protein
Keywords: Yellow Fluorescent Protein, beta barrel, chromophore, fluorescent protein, high pressure, Luminescence, Photoprotein, LUMINESCENT PROTEIN
Deposited on 2008-07-09, released 2008-09-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.44 Å
R-factor: 0.206
AEROSPACI score: 0.63 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Green fluorescent protein
    Species: Aequorea victoria [TaxId:6100]
    Gene: GFP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212 (6-End)
      • expression tag (2-5)
      • chromophore (70)
      • engineered (72-73)
      • engineered (76)
      • engineered (207)
    Domains in SCOPe 2.08: d3dqma1, d3dqma2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3dqmA (A:)
gddpmvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpv
pwptlvttfgyglmcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfe
gdtlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgs
vqladhyqqntpigdgpvllpdnhylsyqsalskdpnekrdhmvllefvtaagitlgmde
lyk

    Sequence, based on observed residues (ATOM records): (download) 
    >3dqmA (A:)
dpmvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgyglmcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylsyqsalskdpnekrdhmvllefvtaagit