PDB entry 3dqf
View 3dqf on RCSB PDB site
Description: Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 6: Structure 10 in a Series of 26 High Pressure Structures
Class: luminescent protein
Keywords: Yellow Fluorescent Protein, beta barrel, chromophore, fluorescent protein, high pressure, Luminescence, Photoprotein, LUMINESCENT PROTEIN
Deposited on
2008-07-09, released
2008-09-23
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.46 Å
R-factor: 0.198
AEROSPACI score: 0.61
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Green fluorescent protein
Species: Aequorea victoria [TaxId:6100]
Gene: GFP
Database cross-references and differences (RAF-indexed):
- Uniprot P42212 (6-End)
- expression tag (2-5)
- chromophore (70)
- engineered (72-73)
- engineered (76)
- engineered (207)
Domains in SCOPe 2.08: d3dqfa1, d3dqfa2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3dqfA (A:)
gddpmvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpv
pwptlvttfgyglmcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfe
gdtlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgs
vqladhyqqntpigdgpvllpdnhylsyqsalskdpnekrdhmvllefvtaagitlgmde
lyk
Sequence, based on observed residues (ATOM records): (download)
>3dqfA (A:)
dpmvskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgyglmcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylsyqsalskdpnekrdhmvllefvtaagit