Lineage for d4ndja1 (4ndj A:53-280)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2164731Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. 2164732Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. 2164733Family d.22.1.1: Fluorescent proteins [54512] (6 protein domains)
  6. 2164737Protein Green fluorescent protein, GFP [54513] (4 species)
  7. 2164743Species Jellyfish (Aequorea victoria) [TaxId:6100] [54514] (175 PDB entries)
    Uniprot P42212
  8. 2164913Domain d4ndja1: 4ndj A:53-280 [266910]

Details for d4ndja1

PDB Entry: 4ndj (more details), 1.85 Å

PDB Description: crystal structure of a computational designed engrailed homeodomain variant fused with yfp
PDB Compounds: (A:) Green fluorescent protein, chimeric construct

SCOPe Domain Sequences for d4ndja1:

Sequence; same for both SEQRES and ATOM records: (download)

>d4ndja1 d.22.1.1 (A:53-280) Green fluorescent protein, GFP {Jellyfish (Aequorea victoria) [TaxId: 6100]}
vskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlklicttgklpvpwptl
vttlgyglqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynshnvyitadkqkngikanfkirhniedggvqlad
hyqqntpigdgpvllpdnhylsyqsklskdpnekrdhmvllefvtaagit

SCOPe Domain Coordinates for d4ndja1:

Click to download the PDB-style file with coordinates for d4ndja1.
(The format of our PDB-style files is described here.)

Timeline for d4ndja1: