Lineage for Species: Jellyfish (Aequorea victoria) [TaxId: 6100]

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.22: GFP-like [54510] (1 superfamily)
    beta-sheet folds into a barrel (n=11, S=14) around the central helix
  4. Superfamily d.22.1: GFP-like [54511] (3 families) (S)
  5. Family d.22.1.1: Fluorescent proteins [54512] (6 proteins)
  6. Protein automated matches [190406] (19 species)
    not a true protein
  7. Species Jellyfish (Aequorea victoria) [TaxId:6100] [188134] (56 PDB entries)

PDB entries in Species: Jellyfish (Aequorea victoria) [TaxId: 6100]:

  1. Domain(s) for 1w7s:
    1. Domain d1w7sa_: 1w7s A: [161907]
      automated match to d1hcjc_
    2. Domain d1w7sb_: 1w7s B: [161908]
      automated match to d1hcjc_
    3. Domain d1w7sc_: 1w7s C: [161909]
      automated match to d1hcjc_
    4. Domain d1w7sd_: 1w7s D: [161910]
      automated match to d1hcjc_
  2. Domain(s) for 1w7t:
    1. Domain d1w7ta_: 1w7t A: [161911]
      automated match to d1hcjc_
    2. Domain d1w7tb_: 1w7t B: [161912]
      automated match to d1hcjc_
    3. Domain d1w7tc_: 1w7t C: [161913]
      automated match to d1hcjc_
    4. Domain d1w7td_: 1w7t D: [161914]
      automated match to d1hcjc_
  3. Domain(s) for 1w7u:
    1. Domain d1w7ua_: 1w7u A: [161915]
      automated match to d1hcjc_
    2. Domain d1w7ub_: 1w7u B: [161916]
      automated match to d1hcjc_
    3. Domain d1w7uc_: 1w7u C: [161917]
      automated match to d1hcjc_
    4. Domain d1w7ud_: 1w7u D: [161918]
      automated match to d1hcjc_
  4. Domain(s) for 1yhg:
    1. Domain d1yhga_: 1yhg A: [162201]
      automated match to d1qyoa_
    2. Domain d1yhgb_: 1yhg B: [162202]
      automated match to d1qyoa_
  5. Domain(s) for 1yhh:
  6. Domain(s) for 1yhi:
  7. Domain(s) for 1yj2:
  8. Domain(s) for 1yjf:
  9. Domain(s) for 1z1p:
  10. Domain(s) for 1z1q:
  11. Domain(s) for 2b3p:
  12. Domain(s) for 2b3q:
    1. Domain d2b3qa_: 2b3q A: [162985]
      automated match to d1qyoa_
      complexed with mg
    2. Domain d2b3qb_: 2b3q B: [162986]
      automated match to d1qyoa_
      complexed with mg
    3. Domain d2b3qc_: 2b3q C: [162987]
      automated match to d1qyoa_
      complexed with mg
    4. Domain d2b3qd_: 2b3q D: [162988]
      automated match to d1qyoa_
      complexed with mg
  13. Domain(s) for 2due:
  14. Domain(s) for 2duf:
  15. Domain(s) for 2dug:
  16. Domain(s) for 2duh:
  17. Domain(s) for 2dui:
  18. Domain(s) for 2hqz:
  19. Domain(s) for 2q57:
  20. Domain(s) for 2wsn:
  21. Domain(s) for 2wso:
  22. Domain(s) for 2wur:
  23. Domain(s) for 2y0g:
  24. Domain(s) for 2ydz:
  25. Domain(s) for 2ye0:
  26. Domain(s) for 2ye1:
  27. Domain(s) for 3ed8:
    1. Domain d3ed8a_: 3ed8 A: [174857]
      automated match to d1qyoa_
    2. Domain d3ed8b_: 3ed8 B: [174858]
      automated match to d1qyoa_
    3. Domain d3ed8c_: 3ed8 C: [174859]
      automated match to d1qyoa_
    4. Domain d3ed8d_: 3ed8 D: [174860]
      automated match to d1qyoa_
    5. Domain d3ed8e_: 3ed8 E: [174861]
      automated match to d1qyoa_
  28. Domain(s) for 3st2:
    1. Domain d3st2a1: 3st2 A:0-231 [185513]
      Other proteins in same PDB: d3st2a2, d3st2c2
      automated match to d1huya_
      complexed with po4
    2. Domain d3st2b_: 3st2 B: [185514]
      Other proteins in same PDB: d3st2a2, d3st2c2
      automated match to d1huya_
      complexed with po4
    3. Domain d3st2c1: 3st2 C:3-231 [185515]
      Other proteins in same PDB: d3st2a2, d3st2c2
      automated match to d1huya_
      complexed with po4
  29. Domain(s) for 3st3:
    1. Domain d3st3a1: 3st3 A:0-231 [185516]
      Other proteins in same PDB: d3st3a2, d3st3b2, d3st3c2
      automated match to d1huya_
      complexed with po4
    2. Domain d3st3b1: 3st3 B:3-231 [185517]
      Other proteins in same PDB: d3st3a2, d3st3b2, d3st3c2
      automated match to d1huya_
      complexed with po4
    3. Domain d3st3c1: 3st3 C:3-231 [185518]
      Other proteins in same PDB: d3st3a2, d3st3b2, d3st3c2
      automated match to d1huya_
      complexed with po4
  30. Domain(s) for 3st4:
    1. Domain d3st4a1: 3st4 A:0-231 [185519]
      Other proteins in same PDB: d3st4a2, d3st4b2
      automated match to d1huya_
      complexed with po4
    2. Domain d3st4b1: 3st4 B:3-231 [185520]
      Other proteins in same PDB: d3st4a2, d3st4b2
      automated match to d1huya_
      complexed with po4
    3. Domain d3st4c_: 3st4 C: [185521]
      Other proteins in same PDB: d3st4a2, d3st4b2
      automated match to d1huya_
      complexed with po4
  31. Domain(s) for 3ztf:
  32. Domain(s) for 4ar7:
  33. Domain(s) for 4as8:
  34. Domain(s) for 4b5y:
  35. Domain(s) for 4bdu:
    1. Domain d4bdua1: 4bdu A:2-230 [265921]
      Other proteins in same PDB: d4bdua2, d4bdub2, d4bduc2, d4bdud2
      automated match to d4bdud1
    2. Domain d4bdub1: 4bdu B:2-230 [265923]
      Other proteins in same PDB: d4bdua2, d4bdub2, d4bduc2, d4bdud2
      automated match to d4bdud1
    3. Domain d4bduc1: 4bdu C:2-230 [265925]
      Other proteins in same PDB: d4bdua2, d4bdub2, d4bduc2, d4bdud2
      automated match to d4bdud1
    4. Domain d4bdud1: 4bdu D:2-230 [265927]
      Other proteins in same PDB: d4bdua2, d4bdub2, d4bduc2, d4bdud2
      automated match to d3vhta_
  36. Domain(s) for 5yr3:
  37. Domain(s) for 6dq0:
    1. Domain d6dq0a_: 6dq0 A: [358890]
      automated match to d3srya_
      complexed with edo, na
    2. Domain d6dq0b_: 6dq0 B: [358911]
      automated match to d3srya_
      complexed with edo, na
  38. Domain(s) for 6dq1:
  39. Domain(s) for 6l02:
  40. Domain(s) for 6lr7:
  41. Domain(s) for 6pfr:
  42. Domain(s) for 6pfs:
  43. Domain(s) for 6pft:
  44. Domain(s) for 6pfu:
  45. Domain(s) for 6uhj:
  46. Domain(s) for 6uhk:
    1. Domain d6uhka_: 6uhk A: [382495]
      automated match to d3srya_
    2. Domain d6uhkb_: 6uhk B: [382479]
      automated match to d3srya_
  47. Domain(s) for 6uhl:
    1. Domain d6uhla_: 6uhl A: [382514]
      automated match to d3srya_
      complexed with unl
    2. Domain d6uhlb_: 6uhl B: [382447]
      automated match to d3srya_
      complexed with unl
  48. Domain(s) for 6uhm:
    1. Domain d6uhma_: 6uhm A: [382440]
      automated match to d3srya_
    2. Domain d6uhmb_: 6uhm B: [382470]
      automated match to d3srya_
  49. Domain(s) for 6uhn:
    1. Domain d6uhna_: 6uhn A: [382443]
      automated match to d3srya_
      complexed with unl
    2. Domain d6uhnb_: 6uhn B: [382471]
      automated match to d3srya_
      complexed with unl
  50. Domain(s) for 6uho:
    1. Domain d6uhoa_: 6uho A: [382454]
      automated match to d3srya_
      complexed with unl
    2. Domain d6uhob_: 6uho B: [382465]
      automated match to d3srya_
      complexed with unl
  51. Domain(s) for 6uhp:
    1. Domain d6uhpa_: 6uhp A: [382453]
      automated match to d3srya_
    2. Domain d6uhpb_: 6uhp B: [382469]
      automated match to d3srya_
  52. Domain(s) for 6uhq:
  53. Domain(s) for 6uhr:
    1. Domain d6uhra_: 6uhr A: [382459]
      automated match to d3srya_
    2. Domain d6uhrb_: 6uhr B: [382509]
      automated match to d3srya_
  54. Domain(s) for 6xzf:
  55. Domain(s) for 7a7w:
  56. Domain(s) for 7a7y:

More info for Species Jellyfish (Aequorea victoria) [TaxId:6100] from d.22.1.1 automated matches

Timeline for Species Jellyfish (Aequorea victoria) [TaxId:6100] from d.22.1.1 automated matches: