Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2098542Fold c.10: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) [52046] (3 superfamilies)
    2 curved layers, a/b; parallel beta-sheet; order 1234...N; there are sequence similarities between different superfamilies
  4. 2098611Superfamily c.10.2: L domain-like [52058] (9 families) (S)
    less regular structure consisting of variable repeats
  5. 2098805Family c.10.2.0: automated matches [191489] (1 protein)
    not a true family
  6. 2098806Protein automated matches [190787] (11 species)
    not a true protein

Species:

  1. 2098807Chaetomium thermophilum [TaxId:209285] [275055] (1 PDB entry)
  2. 2098810Chaetomium thermophilum [TaxId:759272] [274975] (1 PDB entry)
  3. 2098812Human (Homo sapiens) [TaxId:9606] [188042] (12 PDB entries)
    1. Domains for 2hr7:
      1. 2098820Domain d2hr7a1: 2hr7 A:4-156 [242060]
        Other proteins in same PDB: d2hr7a2, d2hr7b2
        automated match to d2dtge4
        complexed with gol, nag, p33, so4
      2. 2098821Domain d2hr7a3: 2hr7 A:312-469 [242062]
        Other proteins in same PDB: d2hr7a2, d2hr7b2
        automated match to d2dtge5
        complexed with gol, nag, p33, so4
      3. 2098822Domain d2hr7b1: 2hr7 B:4-156 [242063]
        Other proteins in same PDB: d2hr7a2, d2hr7b2
        automated match to d2dtge4
        complexed with gol, nag, p33, so4
      4. 2098823Domain d2hr7b3: 2hr7 B:312-470 [242065]
        Other proteins in same PDB: d2hr7a2, d2hr7b2
        automated match to d2dtge5
        complexed with gol, nag, p33, so4
    2. Domains for 2v70:
      1. 2098833Domain d2v70a_: 2v70 A: [243841]
        automated match to d2v9tb_
        complexed with nag
      2. 2098834Domain d2v70b_: 2v70 B: [243842]
        automated match to d2v9tb_
        complexed with nag
      3. 2098835Domain d2v70c_: 2v70 C: [243843]
        automated match to d2v9tb_
        complexed with nag
      4. 2098836Domain d2v70d_: 2v70 D: [243844]
        automated match to d2v9tb_
        complexed with nag
    3. Domains for 2v9s:
      1. 2098824Domain d2v9sa_: 2v9s A: [168408]
        automated match to d1w8aa_
        complexed with gol, peg
      2. 2098825Domain d2v9sb_: 2v9s B: [168409]
        automated match to d1w8aa_
        complexed with gol, peg
      3. 2098826Domain d2v9sc_: 2v9s C: [168410]
        automated match to d1w8aa_
        complexed with gol, peg
      4. 2098827Domain d2v9sd_: 2v9s D: [168411]
        automated match to d1w8aa_
        complexed with gol, peg
    4. Domain for 2v9t:
    5. Domains for 2wfh:
      1. 2098814Domain d2wfha_: 2wfh A: [169305]
        automated match to d1w8aa_
        complexed with so4
      2. 2098815Domain d2wfhb_: 2wfh B: [169306]
        automated match to d1w8aa_
        complexed with so4
    6. Domain for 2xwt:
    7. Domains for 3be1:
      1. 2098831Domain d3be1a1: 3be1 A:1-164 [239157]
        Other proteins in same PDB: d3be1a2, d3be1a4, d3be1l1, d3be1l2
        automated match to d1n8yc1
        complexed with mes, nag
      2. 2098832Domain d3be1a3: 3be1 A:322-487 [239159]
        Other proteins in same PDB: d3be1a2, d3be1a4, d3be1l1, d3be1l2
        automated match to d1n8yc2
        complexed with mes, nag
    8. Domain for 3g04:
    9. Domains for 3u7u:
      1. 2098829Domain d3u7ua1: 3u7u A:1-154 [250145]
        Other proteins in same PDB: d3u7ua2
        automated match to d1n8zc1
        complexed with nag
      2. 2098830Domain d3u7ua3: 3u7u A:312-477 [250147]
        Other proteins in same PDB: d3u7ua2
        automated match to d1n8zc2
        complexed with nag
    10. Domains for 4cnc:
      1. 2098817Domain d4cnca_: 4cnc A: [237123]
        automated match to d1ozna_
        complexed with gol, na, nag, peg, so4
      2. 2098818Domain d4cncb_: 4cnc B: [237122]
        automated match to d1ozna_
        complexed with gol, na, nag, peg, so4
    11. Domain for 4cnm:
    12. Domains for 5my6:
      1. 2294368Domain d5my6a1: 5my6 A:24-187 [337669]
        Other proteins in same PDB: d5my6a2, d5my6b_
        automated match to d1n8zc1
        complexed with gol, nag
      2. 2294370Domain d5my6a3: 5my6 A:345-510 [337671]
        Other proteins in same PDB: d5my6a2, d5my6b_
        automated match to d1n8zc2
        complexed with gol, nag
  4. 2098837Inshore hagfish (Eptatretus burgeri) [TaxId:7764] [193205] (2 PDB entries)
    1. Domain for 2o6q:
    2. Domain for 2o6r:
  5. 2098840Lampetra planeri [TaxId:7750] [268556] (1 PDB entry)
  6. 2098843Lethenteron camtschaticum [TaxId:980415] [256153] (1 PDB entry)
  7. 2098845Listeria monocytogenes [TaxId:1639] [225009] (1 PDB entry)
  8. 2098847Listeria monocytogenes [TaxId:169963] [228586] (2 PDB entries)
    1. Domains for 4aw4:
      1. 2098848Domain d4aw4a1: 4aw4 A:36-262 [234101]
        Other proteins in same PDB: d4aw4a2, d4aw4b2
        automated match to d1h6ua2
        complexed with gol, so4
      2. 2098849Domain d4aw4b1: 4aw4 B:36-262 [234103]
        Other proteins in same PDB: d4aw4a2, d4aw4b2
        automated match to d1h6ua2
        complexed with gol, so4
      3. 2098850Domain d4aw4c1: 4aw4 C:36-262 [234105]
        Other proteins in same PDB: d4aw4a2, d4aw4b2
        automated match to d1h6ua2
        complexed with gol, so4
    2. Domains for 4cc4:
      1. 2098851Domain d4cc4a1: 4cc4 A:35-219 [234301]
        Other proteins in same PDB: d4cc4a2, d4cc4a3, d4cc4b1, d4cc4b2, d4cc4b3, d4cc4c2, d4cc4c3, d4cc4c4, d4cc4d_, d4cc4e2, d4cc4f1, d4cc4f2
        automated match to d4cc4e1
        complexed with cl, gol, pe4, po4, so4
      2. 2098852Domain d4cc4c1: 4cc4 C:35-219 [234304]
        Other proteins in same PDB: d4cc4a2, d4cc4a3, d4cc4b1, d4cc4b2, d4cc4b3, d4cc4c2, d4cc4c3, d4cc4c4, d4cc4d_, d4cc4e2, d4cc4f1, d4cc4f2
        automated match to d4cc4e1
        complexed with cl, gol, pe4, po4, so4
      3. 2098853Domain d4cc4e1: 4cc4 E:35-219 [228587]
        Other proteins in same PDB: d4cc4a2, d4cc4a3, d4cc4b1, d4cc4b2, d4cc4b3, d4cc4c2, d4cc4c3, d4cc4c4, d4cc4d_, d4cc4e2, d4cc4f1, d4cc4f2
        automated match to d2omza2
        complexed with cl, gol, pe4, po4, so4
  9. 2098854Norway rat (Rattus norvegicus) [TaxId:10116] [238487] (2 PDB entries)
    1. Domain for 4p8s:
    2. Domain for 4p91:
  10. 2098857Sea lamprey (Petromyzon marinus) [TaxId:7757] [231246] (5 PDB entries)
    1. Domains for 2r9u:
      1. 2098859Domain d2r9ua1: 2r9u A:22-190 [231247]
        Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
        automated match to d2o6ra_
      2. 2098860Domain d2r9ub1: 2r9u B:22-190 [231248]
        Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
        automated match to d2o6ra_
      3. 2098861Domain d2r9uc1: 2r9u C:22-190 [231249]
        Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
        automated match to d2o6ra_
      4. 2098862Domain d2r9ud1: 2r9u D:22-190 [231250]
        Other proteins in same PDB: d2r9ua2, d2r9ub2, d2r9uc2, d2r9ud2
        automated match to d2o6ra_
    2. Domain for 3g39:
    3. Domains for 3g3a:
      1. 2098863Domain d3g3aa_: 3g3a A: [232233]
        Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
        automated match to d2o6ra_
      2. 2098864Domain d3g3ac_: 3g3a C: [232234]
        Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
        automated match to d2o6ra_
      3. 2098865Domain d3g3ae_: 3g3a E: [232235]
        Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
        automated match to d2o6ra_
      4. 2098866Domain d3g3ag_: 3g3a G: [239291]
        Other proteins in same PDB: d3g3ab_, d3g3ad_, d3g3af_, d3g3ah_
        automated match to d3g3aa_
    4. Domains for 3g3b:
      1. 2098870Domain d3g3ba_: 3g3b A: [232236]
        Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
        automated match to d2o6ra_
        mutant
      2. 2098871Domain d3g3bc_: 3g3b C: [232237]
        Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
        automated match to d2o6ra_
        mutant
      3. 2098872Domain d3g3be_: 3g3b E: [239292]
        Other proteins in same PDB: d3g3bb_, d3g3bd_, d3g3bf_, d3g3bh_
        automated match to d3g3ba_
        mutant
    5. Domains for 3twi:
      1. 2098867Domain d3twid_: 3twi D: [233750]
        automated match to d2o6ra_
        complexed with gol
      2. 2098868Domain d3twie1: 3twi E:21-185 [233752]
        automated match to d2o6ra_
        complexed with gol
      3. 2098869Domain d3twif_: 3twi F: [233751]
        automated match to d2o6ra_
        complexed with gol
  11. 2268396Branchiostoma floridae [TaxId:7739] [311702] (1 PDB entry)

More info for Protein automated matches from c.10.2.0: automated matches

Timeline for Protein automated matches from c.10.2.0: automated matches: