PDB entry 5ufb

View 5ufb on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) Tn4-22 (Apo)
Class: immune system
Keywords: variable lymphocyte receptors, VLR, leucine-rich repeat, LRR, adaptive immunity, immune system, sea lamprey, jawless fish, receptor, glycan binding, glycan receptor
Deposited on 2017-01-04, released 2017-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tn4-22
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed):
    • PDB 5UFB (Start-247)
    Domains in SCOPe 2.08: d5ufba1, d5ufba2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5ufbA (A:)
hhhhhhggcpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlv
nlqklylsgnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnql
talpegvfdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlss
lthaylfgnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravte
astspskc

    Sequence, based on observed residues (ATOM records): (download) 
    >5ufbA (A:)
gcpsqcscrgtyvdcdsrrlasvpagiptnvqilnlynnqitnlepgvfdrlvnlqklyl
sgnqlqalpvgvfdklsqltflsldenkltalpngvfdklteltylnlntnqltalpegv
fdrlvhlkellmccnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylf
gnpwdcecrdimylrnwvadhtsivmrwdgkavndpdsakcagtntpvravteastspsk
c