PDB entry 4k79

View 4k79 on RCSB PDB site
Description: Recognition of the Thomsen-Friedenreich Antigen by a Lamprey Variable Lymphocyte Receptor
Class: immune system
Keywords: Leucine Rich Repeat, Antigen Receptor, Thomsen-Friedenreich Antigen, IMMUNE SYSTEM
Deposited on 2013-04-16, released 2013-06-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Variable lymphocyte receptor
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k79a_
  • Chain 'B':
    Compound: Variable lymphocyte receptor
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k79b_
  • Chain 'C':
    Compound: Variable lymphocyte receptor
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k79c_
  • Chain 'D':
    Compound: Variable lymphocyte receptor
    Species: Petromyzon marinus [TaxId:7757]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4k79d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4k79A (A:)
macpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelh
lwgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsg
afdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhs
sivgegwpwrhspdsakcsgtntpvravteastspskcpg

    Sequence, based on observed residues (ATOM records): (download) 
    >4k79A (A:)
acpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelhl
wgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsga
fdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhss
ivgegwpwrhspdsakcsgtntpvravteastspskcp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4k79B (B:)
macpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelh
lwgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsg
afdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhs
sivgegwpwrhspdsakcsgtntpvravteastspskcpg

    Sequence, based on observed residues (ATOM records): (download) 
    >4k79B (B:)
acpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelhl
wgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsga
fdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhss
ivgegwpwrhspdsakcsgtntpvravteastspskcp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4k79C (C:)
macpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelh
lwgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsg
afdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhs
sivgegwpwrhspdsakcsgtntpvravteastspskcpg

    Sequence, based on observed residues (ATOM records): (download) 
    >4k79C (C:)
acpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelhl
wgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsga
fdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhss
ivgegwpwrhspdsakcsgtntpvravteastspskcp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4k79D (D:)
macpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelh
lwgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsg
afdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhs
sivgegwpwrhspdsakcsgtntpvravteastspskcpg

    Sequence, based on observed residues (ATOM records): (download) 
    >4k79D (D:)
acpsqcscsgtevncagkslasvpagiptttrvlylnsnqitklepgvfdrlanlrelhl
wgnqlvslppgvfdnlanleklwlnsnqltslpaglfdrlvnlehlglccmkltelpsga
fdkltrlkqlgldqnqlksipdgafarlpslthvwlhtnpwdcqctdilylsgwvaqhss
ivgegwpwrhspdsakcsgtntpvravteastspskcp