PDB entry 6bxa
View 6bxa on RCSB PDB site
Description: Crystal structure of N-terminal fragment of Zebrafish Toll-Like Receptor 5 (TLR5) with Lamprey Variable Lymphocyte Receptor 2 (VLR2) bound
Class: immune system
Keywords: VLR, LEUCINE-RICH REPEAT, antibody, IMMUNE SYSTEM
Deposited on
2017-12-18, released
2018-05-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Toll-like receptor 5b, Variable lymphocyte receptor B chimera
Species: Eptatretus burgeri [TaxId:7764]
Gene: VLRB
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Toll-like receptor 5b, Variable lymphocyte receptor B chimera
Species: Eptatretus burgeri [TaxId:7764]
Gene: VLRB
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Variable Lymphocyte Receptor 2
Species: Petromyzon marinus [TaxId:7757]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6bxac_ - Chain 'D':
Compound: Variable Lymphocyte Receptor 2
Species: Petromyzon marinus [TaxId:7757]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6bxad_ - Heterogens: NAG, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>6bxaC (C:)
gghhhhhhgsenlyfqgacpsqcscsgttvdcsgkslasvptgiptttqvlglssnqitk
lepgvfdslvnlqilvlyqnqlttlpagvfdrlinlkelyfsnnqltslpagvfdkltql
trlelqtnqlksiprgafdnlksltniylfnnpwdcecsdilylknwivqhasivnpdgh
ggvdnvkcsgtntpvravteastspskcp
Sequence, based on observed residues (ATOM records): (download)
>6bxaC (C:)
acpsqcscsgttvdcsgkslasvptgiptttqvlglssnqitklepgvfdslvnlqilvl
yqnqlttlpagvfdrlinlkelyfsnnqltslpagvfdkltqltrlelqtnqlksiprga
fdnlksltniylfnnpwdcecsdilylknwivqhasivnpdghggvdnvkcsgtntpvra
vteastspskcp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>6bxaD (D:)
gghhhhhhgsenlyfqgacpsqcscsgttvdcsgkslasvptgiptttqvlglssnqitk
lepgvfdslvnlqilvlyqnqlttlpagvfdrlinlkelyfsnnqltslpagvfdkltql
trlelqtnqlksiprgafdnlksltniylfnnpwdcecsdilylknwivqhasivnpdgh
ggvdnvkcsgtntpvravteastspskcp
Sequence, based on observed residues (ATOM records): (download)
>6bxaD (D:)
acpsqcscsgttvdcsgkslasvptgiptttqvlglssnqitklepgvfdslvnlqilvl
yqnqlttlpagvfdrlinlkelyfsnnqltslpagvfdkltqltrlelqtnqlksiprga
fdnlksltniylfnnpwdcecsdilylknwivqhasivnpdghggvdnvkcsgtntpvra
vteastspskcp