Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2808719Fold b.69: 7-bladed beta-propeller [50964] (15 superfamilies)
    consists of seven 4-stranded beta-sheet motifs; meander
  4. 2808917Superfamily b.69.4: WD40 repeat-like [50978] (4 families) (S)
    also contains 8-bladed propellers
  5. 2809156Family b.69.4.0: automated matches [191412] (1 protein)
    not a true family
  6. 2809157Protein automated matches [190568] (11 species)
    not a true protein

Species:

  1. 2809158Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [267834] (3 PDB entries)
    1. Domains for 3frx:
      1. 2809159Domain d3frxa_: 3frx A: [264797]
        automated match to d4aowa_
        complexed with mn
      2. 2809160Domain d3frxb_: 3frx B: [264798]
        automated match to d4aowa_
        complexed with mn
      3. 2809161Domain d3frxc_: 3frx C: [264799]
        automated match to d4aowa_
        complexed with mn
      4. 2809162Domain d3frxd_: 3frx D: [264800]
        automated match to d4aowa_
        complexed with mn
    2. Domains for 4bh6:
      1. 2809163Domain d4bh6a_: 4bh6 A: [265930]
        automated match to d4n14a_
      2. 2809164Domain d4bh6b_: 4bh6 B: [265931]
        automated match to d4n14a_
      3. 2809165Domain d4bh6c_: 4bh6 C: [265932]
        automated match to d4n14a_
      4. 2809166Domain d4bh6d_: 4bh6 D: [265933]
        automated match to d4n14a_
      5. 2809167Domain d4bh6e_: 4bh6 E: [265934]
        automated match to d4n14a_
      6. 2809168Domain d4bh6f_: 4bh6 F: [265935]
        automated match to d4n14a_
      7. 2809169Domain d4bh6g_: 4bh6 G: [265936]
        automated match to d4n14a_
      8. 2809170Domain d4bh6h_: 4bh6 H: [265937]
        automated match to d4n14a_
    3. Domain for 6zvi:
  2. 2809172Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [267880] (22 PDB entries)
    1. Domains for 3rfh:
      1. 2809176Domain d3rfha_: 3rfh A: [265318]
        automated match to d4aowa_
      2. 2809177Domain d3rfhb_: 3rfh B: [265319]
        automated match to d4aowa_
      3. 2809178Domain d3rfhc_: 3rfh C: [265320]
        automated match to d4aowa_
      4. 2809179Domain d3rfhd_: 3rfh D: [265321]
        automated match to d4aowa_
    2. Domain for 4psw:
    3. Domains for 4psx:
      1. 2809174Domain d4psxb_: 4psx B: [344021]
        Other proteins in same PDB: d4psxa_, d4psxd_
        automated match to d2yb8b_
        complexed with coa, so4
      2. 2809175Domain d4psxe_: 4psx E: [344022]
        Other proteins in same PDB: d4psxa_, d4psxd_
        automated match to d2yb8b_
        complexed with coa, so4
    4. Domain for 4ujk:
    5. Domain for 4ujn:
    6. Domain for 4ujp:
    7. Domain for 4ujs:
    8. Domain for 4uju:
    9. Domain for 4ujx:
    10. Domain for 4ujz:
    11. Domain for 4uk2:
    12. Domain for 4uk9:
    13. Domain for 4ukc:
    14. Domain for 4uku:
    15. Domain for 4ukx:
    16. Domain for 4ul4:
    17. Domain for 4ul7:
    18. Domain for 4ul9:
    19. Domain for 4ulc:
    20. Domain for 4ulj:
    21. Domain for 4uln:
    22. Domain for 7a1g:
  3. 2809199Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [372781] (2 PDB entries)
    1. Domain for 6s1l:
    2. Domains for 6s29:
      1. 2809201Domain d6s29a_: 6s29 A: [372785]
        automated match to d4xyha_
        complexed with br
      2. 2809202Domain d6s29c_: 6s29 C: [372782]
        automated match to d4xyha_
        complexed with br
  4. 2809203Fruit fly (Drosophila melanogaster) [TaxId:7227] [391841] (2 PDB entries)
    1. Domains for 6tbl:
      1. 2809205Domain d6tble_: 6tbl E: [391897]
        Other proteins in same PDB: d6tblf2
        automated match to d3j3ag_
        complexed with edo, k
      2. 2809206Domain d6tblf1: 6tbl F:2-335 [391859]
        Other proteins in same PDB: d6tblf2
        automated match to d3j3ag_
        complexed with edo, k
    2. Domain for 6tbn:
  5. 2809207Human (Homo sapiens) [TaxId:9606] [187559] (94 PDB entries)
    1. Domain for 2cnx:
    2. Domains for 2co0:
      1. 2809335Domain d2co0a_: 2co0 A: [163459]
        automated match to d1vyhc1
      2. 2809336Domain d2co0c_: 2co0 C: [163460]
        automated match to d1vyhc1
    3. Domains for 2g99:
      1. 2809259Domain d2g99a_: 2g99 A: [164607]
        automated match to d1vyhc1
        protein/DNA complex
      2. 2809260Domain d2g99b_: 2g99 B: [164608]
        automated match to d1vyhc1
        protein/DNA complex
    4. Domain for 2g9a:
    5. Domain for 2gnq:
    6. Domain for 2h13:
    7. Domain for 2h14:
    8. Domains for 2h68:
      1. 2809226Domain d2h68a_: 2h68 A: [164958]
        automated match to d1vyhc1
      2. 2809227Domain d2h68b_: 2h68 B: [164959]
        automated match to d1vyhc1
    9. Domains for 2h6k:
      1. 2809232Domain d2h6ka_: 2h6k A: [164960]
        automated match to d1vyhc1
      2. 2809233Domain d2h6kb_: 2h6k B: [164961]
        automated match to d1vyhc1
    10. Domains for 2h6n:
      1. 2809214Domain d2h6na_: 2h6n A: [164962]
        automated match to d1vyhc1
      2. 2809215Domain d2h6nb_: 2h6n B: [164963]
        automated match to d1vyhc1
    11. Domains for 2h6q:
      1. 2809230Domain d2h6qa_: 2h6q A: [164964]
        automated match to d1vyhc1
      2. 2809231Domain d2h6qb_: 2h6q B: [164965]
        automated match to d1vyhc1
    12. Domain for 2h9l:
    13. Domains for 2h9m:
      1. 2809256Domain d2h9ma_: 2h9m A: [165021]
        automated match to d1vyhc1
      2. 2809257Domain d2h9mc_: 2h9m C: [165022]
        automated match to d1vyhc1
    14. Domains for 2h9n:
      1. 2809284Domain d2h9na_: 2h9n A: [165023]
        automated match to d1vyhc1
      2. 2809285Domain d2h9nc_: 2h9n C: [165024]
        automated match to d1vyhc1
    15. Domains for 2o9k:
      1. 2809241Domain d2o9ka_: 2o9k A: [166592]
        automated match to d1vyhc1
      2. 2809242Domain d2o9kc_: 2o9k C: [166593]
        automated match to d1vyhc1
    16. Domain for 3eg6:
    17. Domain for 3emh:
    18. Domain for 3mxx:
    19. Domain for 3n0d:
    20. Domain for 3n0e:
    21. Domain for 3p4f:
    22. Domains for 3psl:
      1. 2809224Domain d3psla_: 3psl A: [183954]
        automated match to d1vyhc1
      2. 2809225Domain d3pslb_: 3psl B: [183955]
        automated match to d1vyhc1
    23. Domains for 3smr:
      1. 2809307Domain d3smra_: 3smr A: [216486]
        automated match to d3ur4a_
        complexed with edo, np7, unx
      2. 2809308Domain d3smrb_: 3smr B: [216487]
        automated match to d3ur4a_
        complexed with edo, np7, unx
      3. 2809309Domain d3smrc_: 3smr C: [216488]
        automated match to d3ur4a_
        complexed with edo, np7, unx
      4. 2809310Domain d3smrd_: 3smr D: [216489]
        automated match to d3ur4a_
        complexed with edo, np7, unx
    24. Domains for 3ur4:
      1. 2809297Domain d3ur4a_: 3ur4 A: [186376]
        automated match to d1vyhc1
        complexed with 0bw, cl, edo, so4, unx
      2. 2809298Domain d3ur4b_: 3ur4 B: [186377]
        automated match to d1vyhc1
        complexed with 0bw, cl, edo, so4, unx
    25. Domain for 3uvk:
    26. Domain for 3uvl:
    27. Domain for 3uvm:
    28. Domain for 3uvo:
    29. Domain for 4a7j:
    30. Domain for 4gga:
    31. Domain for 4ggc:
    32. Domains for 4gm8:
      1. 2809316Domain d4gm8a_: 4gm8 A: [234482]
        automated match to d2h9la_
      2. 2809317Domain d4gm8b_: 4gm8 B: [234483]
        automated match to d2h9la_
      3. 2809318Domain d4gm8c_: 4gm8 C: [234484]
        automated match to d2h9la_
      4. 2809319Domain d4gm8d_: 4gm8 D: [234485]
        automated match to d2h9la_
    33. Domains for 4gm9:
      1. 2809327Domain d4gm9a_: 4gm9 A: [236990]
        automated match to d4gm8c_
      2. 2809328Domain d4gm9b_: 4gm9 B: [236992]
        automated match to d4gm8c_
    34. Domain for 4gmb:
    35. Domain for 4ia9:
    36. Domain for 4n14:
    37. Domains for 4ql1:
      1. 2809238Domain d4ql1a_: 4ql1 A: [261916]
        automated match to d2h9la_
        complexed with 35q, edo, gol, unx
      2. 2809239Domain d4ql1b_: 4ql1 B: [261917]
        automated match to d2h9la_
        complexed with 35q, edo, gol, unx
    38. Domain for 4qqe:
    39. Domain for 4yvd:
    40. Domains for 5eal:
      1. 2809305Domain d5eala_: 5eal A: [278977]
        automated match to d2h9la_
        complexed with 5ml, cl, edo, gol, unx
      2. 2809306Domain d5ealb_: 5eal B: [278978]
        automated match to d2h9la_
        complexed with 5ml, cl, edo, gol, unx
    41. Domains for 5eam:
      1. 2809303Domain d5eama_: 5eam A: [278972]
        automated match to d2h9la_
        complexed with 5mn, btb, edo, so4, unx
      2. 2809304Domain d5eamb_: 5eam B: [278975]
        automated match to d2h9la_
        complexed with 5mn, btb, edo, so4, unx
    42. Domain for 5eap:
    43. Domains for 5ear:
      1. 2809299Domain d5eara_: 5ear A: [278973]
        automated match to d2h9la_
        complexed with 5mq, edo, so4, unx
      2. 2809300Domain d5earb_: 5ear B: [278974]
        automated match to d2h9la_
        complexed with 5mq, edo, so4, unx
    44. Domain for 5m23:
    45. Domain for 5m25:
    46. Domain for 5vfc:
    47. Domain for 6byn:
    48. Domain for 6dy7:
    49. Domain for 6dya:
    50. Domains for 6e1z:
      1. 2809208Domain d6e1za_: 6e1z A: [365762]
        automated match to d4gm9b_
        protein/DNA complex; complexed with hlp
      2. 2809209Domain d6e1zb_: 6e1z B: [365743]
        automated match to d4gm9b_
        protein/DNA complex; complexed with hlp
    51. Domains for 6e22:
      1. 2809268Domain d6e22a_: 6e22 A: [365786]
        automated match to d4gm9b_
        protein/DNA complex; complexed with hls, so4
      2. 2809269Domain d6e22b_: 6e22 B: [365770]
        automated match to d4gm9b_
        protein/DNA complex; complexed with hls, so4
    52. Domains for 6e23:
      1. 2809274Domain d6e23a_: 6e23 A: [365744]
        automated match to d4gm9b_
        protein/DNA complex; complexed with epe, hlj
      2. 2809275Domain d6e23b_: 6e23 B: [365805]
        automated match to d4gm9b_
        protein/DNA complex; complexed with epe, hlj
    53. Domain for 6icz:
    54. Domains for 6id0:
      1. 2809346Domain d6id0e_: 6id0 E: [365967]
        Other proteins in same PDB: d6id0a_, d6id0b_, d6id0c1, d6id0c2, d6id0c3, d6id0c4, d6id0c5, d6id0d_, d6id0f_, d6id0g_, d6id0h_, d6id0i_, d6id0j_, d6id0k_, d6id0l_, d6id0m_, d6id0n_, d6id0o_, d6id0p_, d6id0q1, d6id0q2, d6id0r1, d6id0r2, d6id0s_, d6id0y_
        automated match to d3jb9l_
        complexed with gtp, ihp, mg, zn
      2. 2809347Domain d6id0t_: 6id0 T: [365959]
        Other proteins in same PDB: d6id0a_, d6id0b_, d6id0c1, d6id0c2, d6id0c3, d6id0c4, d6id0c5, d6id0d_, d6id0f_, d6id0g_, d6id0h_, d6id0i_, d6id0j_, d6id0k_, d6id0l_, d6id0m_, d6id0n_, d6id0o_, d6id0p_, d6id0q1, d6id0q2, d6id0r1, d6id0r2, d6id0s_, d6id0y_
        automated match to d4yvda_
        complexed with gtp, ihp, mg, zn
    55. Domains for 6id1:
      1. 2809344Domain d6id1e_: 6id1 E: [365890]
        Other proteins in same PDB: d6id1a_, d6id1b_, d6id1c1, d6id1c2, d6id1c3, d6id1c4, d6id1c5, d6id1d_, d6id1f_, d6id1g_, d6id1h_, d6id1i_, d6id1j_, d6id1k_, d6id1l_, d6id1m_, d6id1n_, d6id1o_, d6id1p_, d6id1q1, d6id1q2, d6id1r1, d6id1r2, d6id1s_, d6id1y_
        automated match to d3jb9l_
        complexed with gtp, ihp, mg, zn
      2. 2809345Domain d6id1t_: 6id1 T: [365893]
        Other proteins in same PDB: d6id1a_, d6id1b_, d6id1c1, d6id1c2, d6id1c3, d6id1c4, d6id1c5, d6id1d_, d6id1f_, d6id1g_, d6id1h_, d6id1i_, d6id1j_, d6id1k_, d6id1l_, d6id1m_, d6id1n_, d6id1o_, d6id1p_, d6id1q1, d6id1q2, d6id1r1, d6id1r2, d6id1s_, d6id1y_
        automated match to d4yvda_
        complexed with gtp, ihp, mg, zn
    56. Domain for 6ofz:
    57. Domain for 6oi0:
    58. Domain for 6oi1:
    59. Domain for 6oi2:
    60. Domains for 6pg3:
      1. 2809323Domain d6pg3a_: 6pg3 A: [378061]
        automated match to d4gm9b_
        complexed with ohj
      2. 2809324Domain d6pg3b_: 6pg3 B: [378065]
        automated match to d4gm9b_
        complexed with ohj
    61. Domain for 6pg4:
    62. Domain for 6pg5:
    63. Domains for 6pg6:
      1. 2809281Domain d6pg6a_: 6pg6 A: [378085]
        automated match to d4gm9b_
        complexed with cl, oh7, so4
      2. 2809282Domain d6pg6b_: 6pg6 B: [378093]
        automated match to d4gm9b_
        complexed with cl, oh7, so4
    64. Domain for 6pg7:
    65. Domains for 6pg8:
      1. 2809277Domain d6pg8a_: 6pg8 A: [378072]
        Other proteins in same PDB: d6pg8b2
        automated match to d4gm9b_
        complexed with cl, ogy, so4
      2. 2809278Domain d6pg8b1: 6pg8 B:22-334 [378080]
        Other proteins in same PDB: d6pg8b2
        automated match to d4gm9b_
        complexed with cl, ogy, so4
      3. 2809279Domain d6pg8c_: 6pg8 C: [378079]
        Other proteins in same PDB: d6pg8b2
        automated match to d4gm9b_
        complexed with cl, ogy, so4
      4. 2809280Domain d6pg8d_: 6pg8 D: [378078]
        Other proteins in same PDB: d6pg8b2
        automated match to d4gm9b_
        complexed with cl, ogy, so4
    66. Domains for 6pg9:
      1. 2809294Domain d6pg9a_: 6pg9 A: [378084]
        automated match to d4gm9b_
        complexed with oh1
      2. 2809295Domain d6pg9b_: 6pg9 B: [378092]
        automated match to d4gm9b_
        complexed with oh1
    67. Domain for 6pga:
    68. Domain for 6pgb:
    69. Domain for 6pgc:
    70. Domain for 6pgd:
    71. Domain for 6pge:
    72. Domain for 6pgf:
    73. Domains for 6u5m:
      1. 2809301Domain d6u5ma_: 6u5m A: [377862]
        automated match to d4gm9b_
        complexed with q0s
      2. 2809302Domain d6u5mb_: 6u5m B: [377870]
        automated match to d4gm9b_
        complexed with q0s
    74. Domains for 6u5y:
      1. 2809247Domain d6u5ya_: 6u5y A: [377848]
        automated match to d4gm9b_
        complexed with q0m
      2. 2809248Domain d6u5yb_: 6u5y B: [377844]
        automated match to d4gm9b_
        complexed with q0m
    75. Domains for 6u6w:
      1. 2809212Domain d6u6wa_: 6u6w A: [377880]
        automated match to d4gm9b_
        complexed with q0y
      2. 2809213Domain d6u6wb_: 6u6w B: [377872]
        automated match to d4gm9b_
        complexed with q0y
    76. Domains for 6u80:
      1. 2809252Domain d6u80a_: 6u80 A: [377883]
        automated match to d4gm9b_
        complexed with q1j
      2. 2809253Domain d6u80b_: 6u80 B: [377869]
        automated match to d4gm9b_
        complexed with q1j
    77. Domains for 6u8b:
      1. 2809218Domain d6u8ba_: 6u8b A: [377876]
        automated match to d4gm9b_
        complexed with q1m
      2. 2809219Domain d6u8bb_: 6u8b B: [377873]
        automated match to d4gm9b_
        complexed with q1m
    78. Domains for 6u8l:
      1. 2809254Domain d6u8la_: 6u8l A: [377886]
        automated match to d4gm9b_
        complexed with q1p, q1s
      2. 2809255Domain d6u8lb_: 6u8l B: [377890]
        automated match to d4gm9b_
        complexed with q1p, q1s
    79. Domain for 6u8o:
    80. Domains for 6ucs:
      1. 2809312Domain d6ucsa_: 6ucs A: [378771]
        automated match to d4gm9b_
        complexed with q41
      2. 2809313Domain d6ucsb_: 6ucs B: [378772]
        automated match to d4gm9b_
        complexed with q41
    81. Domain for 6ufx:
    82. Domains for 6uhy:
      1. 2809220Domain d6uhya_: 6uhy A: [383776]
        automated match to d4gm9b_
        complexed with q8g
      2. 2809221Domain d6uhyb_: 6uhy B: [383799]
        automated match to d4gm9b_
        complexed with q8g
    83. Domains for 6uhz:
      1. 2809216Domain d6uhza_: 6uhz A: [383830]
        automated match to d4gm9b_
        complexed with q8d
      2. 2809217Domain d6uhzb_: 6uhz B: [383781]
        automated match to d4gm9b_
        complexed with q8d
    84. Domains for 6uif:
      1. 2809270Domain d6uifa_: 6uif A: [383904]
        automated match to d4gm9b_
        complexed with q8p
      2. 2809271Domain d6uifb_: 6uif B: [383836]
        automated match to d4gm9b_
        complexed with q8p
    85. Domains for 6uik:
      1. 2809266Domain d6uika_: 6uik A: [383784]
        automated match to d4gm9b_
        complexed with q8m
      2. 2809267Domain d6uikb_: 6uik B: [383824]
        automated match to d4gm9b_
        complexed with q8m
    86. Domains for 6uj4:
      1. 2809249Domain d6uj4a_: 6uj4 A: [383815]
        automated match to d4gm9b_
        complexed with q8s
      2. 2809250Domain d6uj4b_: 6uj4 B: [383802]
        automated match to d4gm9b_
        complexed with q8s
    87. Domains for 6ujh:
      1. 2809236Domain d6ujha_: 6ujh A: [383778]
        automated match to d6ucsa_
        complexed with dms, qbs, so4
      2. 2809237Domain d6ujhb_: 6ujh B: [383821]
        automated match to d6ucsa_
        complexed with dms, qbs, so4
    88. Domain for 6ujj:
    89. Domain for 6ujl:
    90. Domains for 6uoz:
      1. 2809245Domain d6uoza_: 6uoz A: [383826]
        automated match to d4gm9b_
        complexed with qf1
      2. 2809246Domain d6uozb_: 6uoz B: [383884]
        automated match to d4gm9b_
        complexed with qf1
    91. Domain for 7axu:
    92. Domains for 7bed:
      1. 3084420Domain d7bedb_: 7bed B: [420737]
        automated match to d2gnqa_
        complexed with so4
      2. 3084421Domain d7beda_: 7bed A: [420738]
        automated match to d2gnqa_
        complexed with so4
    93. Domains for 7dh6:
      1. 2809330Domain d7dh6a_: 7dh6 A: [394507]
        automated match to d4yvda_
        complexed with ca, ni, so4
      2. 2809331Domain d7dh6b_: 7dh6 B: [394520]
        automated match to d4yvda_
        complexed with ca, ni, so4
      3. 2809332Domain d7dh6c_: 7dh6 C: [394537]
        automated match to d4yvda_
        complexed with ca, ni, so4
      4. 2809333Domain d7dh6d_: 7dh6 D: [394505]
        automated match to d4yvda_
        complexed with ca, ni, so4
    94. Domain for 7jto:
  6. 2809349Mouse (Mus musculus) [TaxId:10090] [188331] (2 PDB entries)
    1. Domains for 2pbi:
      1. 2809350Domain d2pbib_: 2pbi B: [167111]
        Other proteins in same PDB: d2pbid2
        automated match to d1a0rb_
        complexed with gol
      2. 2809351Domain d2pbid1: 2pbi D:1-353 [167112]
        Other proteins in same PDB: d2pbid2
        automated match to d1a0rb_
        complexed with gol
    2. Domains for 6n9g:
      1. 2809352Domain d6n9gc_: 6n9g C: [362470]
        automated match to d2pbib_
      2. 2809353Domain d6n9gd_: 6n9g D: [362311]
        automated match to d2pbib_
  7. 2809354Nostoc punctiforme [TaxId:272131] [255705] (1 PDB entry)
  8. 2809359Schizosaccharomyces japonicus [TaxId:402676] [311483] (1 PDB entry)
  9. 2809361Schizosaccharomyces pombe [TaxId:284812] [354059] (1 PDB entry)
  10. 2809363Thermomonospora curvata [TaxId:2020] [419993] (1 PDB entry)
  11. 3087155Solanum lycopersicum [TaxId:4081] [423472] (1 PDB entry)

More info for Protein automated matches from b.69.4.0: automated matches

Timeline for Protein automated matches from b.69.4.0: automated matches: