SCOPe 2.08: Domain d6id1k_: 6id1 k:

Lineage for d6id1k_ (6id1 k:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.38: Sm-like fold [50181] (5 superfamilies)
   core: barrel, open; n*=4, S*=8; meander; SH3-like topology

4. Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)

5. Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (11 proteins)
   forms homo and heteroheptameric ring structures
   Pfam PF01423

6. Protein D2 core SNRNP protein [50186] (3 species)
   3jb9 chains G and l are D2 subunits from fission yeast; not included because sids are not case sensitive

7. Species Human (Homo sapiens) [TaxId:9606] [50187] (10 PDB entries)

8. Domain d6id1k_: 6id1 k: [365956]
   Other proteins in same PDB: d6id1a_, d6id1b_, d6id1c1, d6id1c2, d6id1c3, d6id1c4, d6id1c5, d6id1e_, d6id1f_, d6id1g_, d6id1h_, d6id1i_, d6id1j_, d6id1l_, d6id1m_, d6id1n_, d6id1o_, d6id1p_, d6id1q1, d6id1q2, d6id1r1, d6id1r2, d6id1s_, d6id1t_, d6id1y_
   automated match to d1b34b_
   complexed with gtp, ihp, mg, zn

Details for d6id1k_

PDB Entry: 6id1, 2.86 Å

PDB Description: cryo-em structure of a human intron lariat spliceosome after prp43 loaded (ils2 complex) at 2.9 angstrom resolution

PDB Compounds: (k:) Small nuclear ribonucleoprotein Sm D2

SCOPe Domain Sequences for d6id1k_:

Sequence, based on SEQRES records:

>d6id1k_ b.38.1.1 (k:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
eeeefntgplsvltqsvknntqvlincrnnkkllgrvkafdrhcnmvlenvkemwtevpk
sgkgkkkskpvnkdryiskmflrgdsvivvlrnplia

Sequence, based on observed residues (ATOM records):

>d6id1k_ b.38.1.1 (k:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
eeeefntgplsvltqsvknntqvlincrnnkkllgrvkafdrhcnmvlenvkemwtepvn
kdryiskmflrgdsvivvlrnplia

Timeline for d6id1k_:

• d6id1k_ first appeared in SCOPe 2.07