Lineage for Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049048Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2049049Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2049050Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (8 protein domains)
    forms homo and heteroheptameric ring structures

Protein Domains:

  1. 2049051Archaeal homoheptameric Sm protein [63758] (6 species)
    1. 2049052Species Archaeoglobus fulgidus, AF-Sm1 [TaxId:2234] [63761] (2 PDB entries)
    2. 2049095Species Archaeoglobus fulgidus, AF-Sm2 [TaxId:2234] [74938] (1 PDB entry)
    3. 2049097Species Methanobacterium thermoautotrophicum [TaxId:145262] [63759] (5 PDB entries)
      MTH649, smap1
    4. 2049147Species Pyrobaculum aerophilum [TaxId:13773] [63760] (2 PDB entries)
      smap1
    5. 2049162Species Pyrococcus abyssi [TaxId:29292] [82089] (2 PDB entries)
    6. 2049205Species Sulfolobus solfataricus [TaxId:2287] [141290] (1 PDB entry)
      Uniprot Q97ZQ0 1-76
      SnRNP-2
  2. 2049220B core SNRNP protein [50190] (1 species)
  3. 2049228D1 core SNRNP protein [50184] (2 species)
    1. 2049229Species Human (Homo sapiens) [TaxId:9606] [50185] (5 PDB entries)
    2. 2049252Species Mouse (Mus musculus) [TaxId:10090] [224861] (1 PDB entry)
  4. 2049255D2 core SNRNP protein [50186] (2 species)
    1. 2049256Species Human (Homo sapiens) [TaxId:9606] [50187] (5 PDB entries)
    2. 2049271Species Mouse (Mus musculus) [TaxId:10090] [224862] (1 PDB entry)
  5. 2049274D3 core SNRNP protein [50188] (1 species)
  6. 2049282Sm-Like archaeal protein Smap3 [89317] (1 species)
    contains additional C-terminal alpha+beta domain
  7. 2049312Small nuclear ribonucleoprotein F, Smf [82087] (1 species)
  8. 2049335U6 snRNA-associated sm-like protein LSM5 [141291] (1 species)

More info for Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP: