Lineage for Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2380450Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2380451Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2380452Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (10 proteins)
    forms homo and heteroheptameric ring structures
    Pfam PF01423

Proteins:

  1. 2380453Archaeal homoheptameric Sm protein [63758] (6 species)
    1. 2380454Species Archaeoglobus fulgidus, AF-Sm1 [TaxId:2234] [63761] (2 PDB entries)
    2. 2380497Species Archaeoglobus fulgidus, AF-Sm2 [TaxId:2234] [74938] (1 PDB entry)
    3. 2380499Species Methanobacterium thermoautotrophicum [TaxId:145262] [63759] (5 PDB entries)
      MTH649, smap1
    4. 2380549Species Pyrobaculum aerophilum [TaxId:13773] [63760] (2 PDB entries)
      smap1
    5. 2380564Species Pyrococcus abyssi [TaxId:29292] [82089] (2 PDB entries)
    6. 2380607Species Sulfolobus solfataricus [TaxId:2287] [141290] (1 PDB entry)
      Uniprot Q97ZQ0 1-76
      SnRNP-2
  2. 2380622B core SNRNP protein [50190] (2 species)
    3jb9 chains b and E are B subunits from fission yeast; not included because sids are not case sensitive
    1. 2380623Species Human (Homo sapiens) [TaxId:9606] [50191] (1 PDB entry)
    2. 2380630Species Saccharomyces cerevisiae S288c [TaxId:559292] [346229] (1 PDB entry)
  3. 2380633D1 core SNRNP protein [50184] (4 species)
    1. 2380634Species Human (Homo sapiens) [TaxId:9606] [50185] (9 PDB entries)
    2. 2380657Species Mouse (Mus musculus) [TaxId:10090] [224861] (1 PDB entry)
    3. 2380660Species Saccharomyces cerevisiae S288c [TaxId:559292] [346230] (1 PDB entry)
    4. 2380663Species Schizosaccharomyces pombe 972h- [TaxId:284812] [346231] (1 PDB entry)
      3jb9 chain f is also D1 subunit; not included because sids are not case sensitive
  4. 2380665D2 core SNRNP protein [50186] (3 species)
    3jb9 chains G and l are D2 subunits from fission yeast; not included because sids are not case sensitive
    1. 2380666Species Human (Homo sapiens) [TaxId:9606] [50187] (9 PDB entries)
    2. 2380681Species Mouse (Mus musculus) [TaxId:10090] [224862] (1 PDB entry)
    3. 2380684Species Saccharomyces cerevisiae S288c [TaxId:559292] [346232] (1 PDB entry)
  5. 2380687D3 core SNRNP protein [50188] (3 species)
    1. 2380688Species Human (Homo sapiens) [TaxId:9606] [50189] (1 PDB entry)
    2. 2380695Species Saccharomyces cerevisiae S288c [TaxId:559292] [346233] (1 PDB entry)
    3. 2380698Species Schizosaccharomyces pombe 972h- [TaxId:284812] [346234] (1 PDB entry)
      3jb9 chain D is also D3 subunit; not included because sids are not case sensitive
  6. 2380700Sm-Like archaeal protein Smap3 [89317] (1 species)
    contains additional C-terminal alpha+beta domain
  7. 2380730Small nuclear ribonucleoprotein E [346048] (1 species)
    3jb9 chains H and m are E subunits from fission yeast; not included because sids are not case sensitive
  8. 2380734Small nuclear ribonucleoprotein F, Smf [82087] (2 species)
    3jb9 chains I and n are F subunits from fission yeast; not included because sids are not case sensitive
    1. 2380735Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [82088] (2 PDB entries)
    2. 2380757Species Saccharomyces cerevisiae S288c [TaxId:559292] [346236] (1 PDB entry)
  9. 2380760Small nuclear ribonucleoprotein G [346049] (2 species)
    1. 2380761Species Saccharomyces cerevisiae S288c [TaxId:559292] [346237] (1 PDB entry)
      3jcm chain a is also G subunit; not included because sids are not case sensitive
    2. 2380763Species Schizosaccharomyces pombe 972h- [TaxId:284812] [346238] (1 PDB entry)
      3jb9 chain o is also G subunit; not included because sids are not case sensitive
  10. 2380765U6 snRNA-associated sm-like protein LSM5 [141291] (1 species)

More info for Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP: