Lineage for Protein: D2 core SNRNP protein

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2380450Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2380451Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2380452Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (11 proteins)
    forms homo and heteroheptameric ring structures
    Pfam PF01423
  6. 2380665Protein D2 core SNRNP protein [50186] (3 species)
    3jb9 chains G and l are D2 subunits from fission yeast; not included because sids are not case sensitive

Species:

  1. 2380666Human (Homo sapiens) [TaxId:9606] [50187] (11 PDB entries)
    1. Domain for 1b34:
    2. Domains for 1vu2:
      1. 2380669Domain d1vu2b_: 1vu2 B: [240851]
        Other proteins in same PDB: d1vu24_, d1vu2a_, d1vu2c_, d1vu2d_, d1vu2f_, d1vu2g_, d1vu2h_, d1vu2i_, d1vu2k_, d1vu2l_, d1vu2n_, d1vu2o_, d1vu2p_, d1vu2q_, d1vu2s_, d1vu2t_, d1vu2v_, d1vu2w_, d1vu2x_, d1vu2y_
        complexed with so4
        complexed with so4
      2. 2380670Domain d1vu2j_: 1vu2 J: [240857]
        Other proteins in same PDB: d1vu24_, d1vu2a_, d1vu2c_, d1vu2d_, d1vu2f_, d1vu2g_, d1vu2h_, d1vu2i_, d1vu2k_, d1vu2l_, d1vu2n_, d1vu2o_, d1vu2p_, d1vu2q_, d1vu2s_, d1vu2t_, d1vu2v_, d1vu2w_, d1vu2x_, d1vu2y_
        complexed with so4
        complexed with so4
      3. 2380671Domain d1vu2r_: 1vu2 R: [240863]
        Other proteins in same PDB: d1vu24_, d1vu2a_, d1vu2c_, d1vu2d_, d1vu2f_, d1vu2g_, d1vu2h_, d1vu2i_, d1vu2k_, d1vu2l_, d1vu2n_, d1vu2o_, d1vu2p_, d1vu2q_, d1vu2s_, d1vu2t_, d1vu2v_, d1vu2w_, d1vu2x_, d1vu2y_
        complexed with so4
        complexed with so4
      4. 2380672Domain d1vu2z_: 1vu2 Z: [240869]
        Other proteins in same PDB: d1vu24_, d1vu2a_, d1vu2c_, d1vu2d_, d1vu2f_, d1vu2g_, d1vu2h_, d1vu2i_, d1vu2k_, d1vu2l_, d1vu2n_, d1vu2o_, d1vu2p_, d1vu2q_, d1vu2s_, d1vu2t_, d1vu2v_, d1vu2w_, d1vu2x_, d1vu2y_
        complexed with so4
        complexed with so4
    3. Domains for 1vu3:
      1. 2380677Domain d1vu3b_: 1vu3 B: [240871]
        Other proteins in same PDB: d1vu3a_, d1vu3c_, d1vu3d_, d1vu3f_, d1vu3g_, d1vu3h_, d1vu3i_, d1vu3k_, d1vu3l_, d1vu3n_, d1vu3o_, d1vu3p_, d1vu3q_, d1vu3s_, d1vu3t_, d1vu3v_, d1vu3x_, d1vu3y_
        complexed with so4
        complexed with so4
      2. 2380678Domain d1vu3j_: 1vu3 J: [240877]
        Other proteins in same PDB: d1vu3a_, d1vu3c_, d1vu3d_, d1vu3f_, d1vu3g_, d1vu3h_, d1vu3i_, d1vu3k_, d1vu3l_, d1vu3n_, d1vu3o_, d1vu3p_, d1vu3q_, d1vu3s_, d1vu3t_, d1vu3v_, d1vu3x_, d1vu3y_
        complexed with so4
        complexed with so4
      3. 2380679Domain d1vu3r_: 1vu3 R: [240883]
        Other proteins in same PDB: d1vu3a_, d1vu3c_, d1vu3d_, d1vu3f_, d1vu3g_, d1vu3h_, d1vu3i_, d1vu3k_, d1vu3l_, d1vu3n_, d1vu3o_, d1vu3p_, d1vu3q_, d1vu3s_, d1vu3t_, d1vu3v_, d1vu3x_, d1vu3y_
        complexed with so4
        complexed with so4
      4. 2380680Domain d1vu3z_: 1vu3 Z: [240888]
        Other proteins in same PDB: d1vu3a_, d1vu3c_, d1vu3d_, d1vu3f_, d1vu3g_, d1vu3h_, d1vu3i_, d1vu3k_, d1vu3l_, d1vu3n_, d1vu3o_, d1vu3p_, d1vu3q_, d1vu3s_, d1vu3t_, d1vu3v_, d1vu3x_, d1vu3y_
        complexed with so4
        complexed with so4
    4. Domain for 3s6n:
    5. Domains for 4f77:
      1. 2380673Domain d4f77b_: 4f77 B: [251905]
        Other proteins in same PDB: d4f774_, d4f77a_, d4f77c_, d4f77d_, d4f77f_, d4f77g_, d4f77h_, d4f77i_, d4f77k_, d4f77l_, d4f77n_, d4f77o_, d4f77p_, d4f77q_, d4f77s_, d4f77t_, d4f77v_, d4f77w_, d4f77x_, d4f77y_
        complexed with so4
        complexed with so4
      2. 2380674Domain d4f77j_: 4f77 J: [251911]
        Other proteins in same PDB: d4f774_, d4f77a_, d4f77c_, d4f77d_, d4f77f_, d4f77g_, d4f77h_, d4f77i_, d4f77k_, d4f77l_, d4f77n_, d4f77o_, d4f77p_, d4f77q_, d4f77s_, d4f77t_, d4f77v_, d4f77w_, d4f77x_, d4f77y_
        complexed with so4
        complexed with so4
      3. 2380675Domain d4f77r_: 4f77 R: [251917]
        Other proteins in same PDB: d4f774_, d4f77a_, d4f77c_, d4f77d_, d4f77f_, d4f77g_, d4f77h_, d4f77i_, d4f77k_, d4f77l_, d4f77n_, d4f77o_, d4f77p_, d4f77q_, d4f77s_, d4f77t_, d4f77v_, d4f77w_, d4f77x_, d4f77y_
        complexed with so4
        complexed with so4
      4. 2380676Domain d4f77z_: 4f77 Z: [251923]
        Other proteins in same PDB: d4f774_, d4f77a_, d4f77c_, d4f77d_, d4f77f_, d4f77g_, d4f77h_, d4f77i_, d4f77k_, d4f77l_, d4f77n_, d4f77o_, d4f77p_, d4f77q_, d4f77s_, d4f77t_, d4f77v_, d4f77w_, d4f77x_, d4f77y_
        complexed with so4
        complexed with so4
    6. Domain for 5xjl:
    7. Domain for 5xjr:
    8. Domain for 5xjt:
    9. Domain for 5xju:
    10. Domains for 6id0:
      1. 3065872Domain d6id0d_: 6id0 d: [365934]
        Other proteins in same PDB: d6id0a_, d6id0b_, d6id0c1, d6id0c2, d6id0c3, d6id0c4, d6id0c5, d6id0e_, d6id0f_, d6id0g_, d6id0h_, d6id0i_, d6id0j_, d6id0l_, d6id0m_, d6id0n_, d6id0o_, d6id0p_, d6id0q1, d6id0q2, d6id0r1, d6id0r2, d6id0s_, d6id0t_, d6id0y_
        automated match to d1b34b_
        complexed with gtp, i6p, mg, zn
      2. 3065917Domain d6id0k_: 6id0 k: [365979]
        Other proteins in same PDB: d6id0a_, d6id0b_, d6id0c1, d6id0c2, d6id0c3, d6id0c4, d6id0c5, d6id0e_, d6id0f_, d6id0g_, d6id0h_, d6id0i_, d6id0j_, d6id0l_, d6id0m_, d6id0n_, d6id0o_, d6id0p_, d6id0q1, d6id0q2, d6id0r1, d6id0r2, d6id0s_, d6id0t_, d6id0y_
        automated match to d1b34b_
        complexed with gtp, i6p, mg, zn
    11. Domains for 6id1:
      1. 3065894Domain d6id1k_: 6id1 k: [365956]
        Other proteins in same PDB: d6id1a_, d6id1b_, d6id1c1, d6id1c2, d6id1c3, d6id1c4, d6id1c5, d6id1e_, d6id1f_, d6id1g_, d6id1h_, d6id1i_, d6id1j_, d6id1l_, d6id1m_, d6id1n_, d6id1o_, d6id1p_, d6id1q1, d6id1q2, d6id1r1, d6id1r2, d6id1s_, d6id1t_, d6id1y_
        automated match to d1b34b_
        complexed with gtp, i6p, mg, zn
      2. 3065916Domain d6id1d_: 6id1 d: [365978]
        Other proteins in same PDB: d6id1a_, d6id1b_, d6id1c1, d6id1c2, d6id1c3, d6id1c4, d6id1c5, d6id1e_, d6id1f_, d6id1g_, d6id1h_, d6id1i_, d6id1j_, d6id1l_, d6id1m_, d6id1n_, d6id1o_, d6id1p_, d6id1q1, d6id1q2, d6id1r1, d6id1r2, d6id1s_, d6id1t_, d6id1y_
        automated match to d1b34b_
        complexed with gtp, i6p, mg, zn
  2. 2380681Mouse (Mus musculus) [TaxId:10090] [224862] (1 PDB entry)
  3. 2380684Saccharomyces cerevisiae S288c [TaxId:559292] [346232] (1 PDB entry)

More info for Protein D2 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Protein D2 core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP: