Lineage for d6id0d_ (6id0 d:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2380450Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2380451Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2380452Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (11 proteins)
    forms homo and heteroheptameric ring structures
    Pfam PF01423
  6. 2380665Protein D2 core SNRNP protein [50186] (3 species)
    3jb9 chains G and l are D2 subunits from fission yeast; not included because sids are not case sensitive
  7. 2380666Species Human (Homo sapiens) [TaxId:9606] [50187] (11 PDB entries)
  8. 3065872Domain d6id0d_: 6id0 d: [365934]
    Other proteins in same PDB: d6id0a_, d6id0b_, d6id0c1, d6id0c2, d6id0c3, d6id0c4, d6id0c5, d6id0e_, d6id0f_, d6id0g_, d6id0h_, d6id0i_, d6id0j_, d6id0l_, d6id0m_, d6id0n_, d6id0o_, d6id0p_, d6id0q1, d6id0q2, d6id0r1, d6id0r2, d6id0s_, d6id0t_, d6id0y_
    automated match to d1b34b_
    complexed with gtp, i6p, mg, zn

Details for d6id0d_

PDB Entry: 6id0 (more details), 2.9 Å

PDB Description: cryo-em structure of a human intron lariat spliceosome prior to prp43 loaded (ils1 complex) at 2.9 angstrom resolution
PDB Compounds: (d:) Small nuclear ribonucleoprotein Sm D2

SCOPe Domain Sequences for d6id0d_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6id0d_ b.38.1.1 (d:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
eeeefntgplsvltqsvknntqvlincrnnkkllgrvkafdrhcnmvlenvkemwtevpk
sgkgkkkskpvnkdryiskmflrgdsvivvlrnplia

SCOPe Domain Coordinates for d6id0d_:

Click to download the PDB-style file with coordinates for d6id0d_.
(The format of our PDB-style files is described here.)

Timeline for d6id0d_:

  • d6id0d_ appears in periodic updates to SCOPe 2.07 starting on 2019-03-15