Lineage for Superfamily b.38.1: Sm-like ribonucleoproteins

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049048Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2049049Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)


  1. 2049050b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (8 protein domains)
    forms homo and heteroheptameric ring structures
  2. 2049341b.38.1.2: Pleiotropic translational regulator Hfq [74939] (2 protein domains)
    forms homohexameric ring structures
  3. 2049553b.38.1.3: Mechanosensitive channel protein MscS (YggB), middle domain [82090] (1 protein)
  4. 2049570b.38.1.4: PF1955-like [141294] (2 protein domains)
    homohexadecameric assembly: two stacked octameric rings
    automatically mapped to Pfam PF11451
  5. 2049579b.38.1.5: LSM14 N-terminal domain-like [141297] (2 protein domains)
    automatically mapped to Pfam PF14438
    automatically mapped to Pfam PF12701
  6. 2049588b.38.1.6: YgdI/YgdR-like [159052] (7 protein domains)
    Pfam PF06004; DUF903, putative lipoprotein; both homohexameric and homoheptameric ring assemblies are observed in the crystals
  7. 2049631b.38.1.0: automated matches [191538] (1 protein)
    not a true family

More info for Superfamily b.38.1: Sm-like ribonucleoproteins

Timeline for Superfamily b.38.1: Sm-like ribonucleoproteins: