SCOPe 2.08: Protein: B core SNRNP protein

Lineage for Protein: B core SNRNP protein

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.38: Sm-like fold [50181] (5 superfamilies)
core: barrel, open; n*=4, S*=8; meander; SH3-like topology
Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)
Family b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP [50183] (11 proteins)
forms homo and heteroheptameric ring structures
Pfam PF01423
Protein B core SNRNP protein [50190] (2 species)
3jb9 chains b and E are B subunits from fission yeast; not included because sids are not case sensitive

Species:

Human (Homo sapiens) [TaxId:9606] [50191] (1 PDB entry)
- Domains for 1d3b:
  1. Domain d1d3bb_: 1d3b B: [24804]
    Other proteins in same PDB: d1d3ba_, d1d3bc_, d1d3be_, d1d3bg_, d1d3bi_, d1d3bk_
    CASP3
    protein/RNA complex; complexed with cit, gol
  2. Domain d1d3bd_: 1d3b D: [24805]
    Other proteins in same PDB: d1d3ba_, d1d3bc_, d1d3be_, d1d3bg_, d1d3bi_, d1d3bk_
    CASP3
    protein/RNA complex; complexed with cit, gol
  3. Domain d1d3bf_: 1d3b F: [24806]
    Other proteins in same PDB: d1d3ba_, d1d3bc_, d1d3be_, d1d3bg_, d1d3bi_, d1d3bk_
    CASP3
    protein/RNA complex; complexed with cit, gol
  4. Domain d1d3bh_: 1d3b H: [24807]
    Other proteins in same PDB: d1d3ba_, d1d3bc_, d1d3be_, d1d3bg_, d1d3bi_, d1d3bk_
    CASP3
    protein/RNA complex; complexed with cit, gol
  5. Domain d1d3bj_: 1d3b J: [24808]
    Other proteins in same PDB: d1d3ba_, d1d3bc_, d1d3be_, d1d3bg_, d1d3bi_, d1d3bk_
    CASP3
    protein/RNA complex; complexed with cit, gol
  6. Domain d1d3bl_: 1d3b L: [24809]
    Other proteins in same PDB: d1d3ba_, d1d3bc_, d1d3be_, d1d3bg_, d1d3bi_, d1d3bk_
    CASP3
    protein/RNA complex; complexed with cit, gol
Saccharomyces cerevisiae S288c [TaxId:559292] [346229] (1 PDB entry)
- Domains for 3jcm:
  1. Domain d3jcmo_: 3jcm O: [344839]
    Other proteins in same PDB: d3jcmj_, d3jcmp_, d3jcmq_, d3jcmr_, d3jcmt_, d3jcmu_, d3jcmv_, d3jcmw_, d3jcmx_, d3jcmy_, d3jcmz_
    complexed with gtp, m7m
  2. Domain d3jcms_: 3jcm S: [344843]
    Other proteins in same PDB: d3jcmj_, d3jcmp_, d3jcmq_, d3jcmr_, d3jcmt_, d3jcmu_, d3jcmv_, d3jcmw_, d3jcmx_, d3jcmy_, d3jcmz_
    complexed with gtp, m7m

More info for Protein B core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP

Timeline for Protein B core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP:

Protein B core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP first appeared (with stable ids) in SCOP 1.55
Protein B core SNRNP protein from b.38.1.1: Sm motif of small nuclear ribonucleoproteins, SNRNP appears in SCOPe 2.07