Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2017115Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2033616Superfamily b.1.30: Zn aminopeptidase insert domain [254133] (2 families) (S)
    same topology as (b.1.15.1)
  5. 2033638Family b.1.30.0: automated matches [254306] (1 protein)
    not a true family
  6. 2033639Protein automated matches [254707] (4 species)
    not a true protein

Species:

  1. 2033640Human (Homo sapiens) [TaxId:9606] [255965] (16 PDB entries)
    1. Domains for 3mdj:
      1. 2033645Domain d3mdja3: 3mdj A:530-614 [247646]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja4, d3mdjb1, d3mdjb2, d3mdjb4, d3mdjc1, d3mdjc2, d3mdjc4
        automated match to d2yd0a3
        complexed with bes, nag, zn
      2. 2033646Domain d3mdjb3: 3mdj B:530-614 [247650]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja4, d3mdjb1, d3mdjb2, d3mdjb4, d3mdjc1, d3mdjc2, d3mdjc4
        automated match to d2yd0a3
        complexed with bes, nag, zn
      3. 2033647Domain d3mdjc3: 3mdj C:530-614 [247654]
        Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja4, d3mdjb1, d3mdjb2, d3mdjb4, d3mdjc1, d3mdjc2, d3mdjc4
        automated match to d2yd0a3
        complexed with bes, nag, zn
    2. Domains for 3qnf:
      1. 2033648Domain d3qnfa3: 3qnf A:530-614 [248933]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfb1, d3qnfb2, d3qnfb4, d3qnfc1, d3qnfc2, d3qnfc4
        automated match to d2yd0a3
        complexed with nag, zn
      2. 2033649Domain d3qnfb3: 3qnf B:530-614 [248936]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfb1, d3qnfb2, d3qnfb4, d3qnfc1, d3qnfc2, d3qnfc4
        automated match to d2yd0a3
        complexed with nag, zn
      3. 2033650Domain d3qnfc3: 3qnf C:530-614 [248940]
        Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfb1, d3qnfb2, d3qnfb4, d3qnfc1, d3qnfc2, d3qnfc4
        automated match to d2yd0a3
        complexed with nag, zn
    3. Domain for 3rjo:
    4. Domains for 3se6:
      1. 2033651Domain d3se6a3: 3se6 A:547-637 [249387]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a4, d3se6a5, d3se6b1, d3se6b2, d3se6b4, d3se6b5
        automated match to d2yd0a3
        complexed with lys, mes, nag, zn
      2. 2033652Domain d3se6b3: 3se6 B:547-637 [249391]
        Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a4, d3se6a5, d3se6b1, d3se6b2, d3se6b4, d3se6b5
        automated match to d2yd0a3
        complexed with lys, mes, nag, zn
    5. Domain for 4fyq:
    6. Domain for 4fyr:
    7. Domain for 4fyt:
    8. Domains for 4jbs:
      1. 2033655Domain d4jbsa3: 4jbs A:547-637 [252874]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa4, d4jbsa5, d4jbsb1, d4jbsb2, d4jbsb4, d4jbsb5
        automated match to d2yd0a3
        complexed with imd, nag, p52, zn
      2. 2033656Domain d4jbsb3: 4jbs B:547-637 [252878]
        Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa4, d4jbsa5, d4jbsb1, d4jbsb2, d4jbsb4, d4jbsb5
        automated match to d2yd0a3
        complexed with imd, nag, p52, zn
    9. Domains for 4p8q:
      1. 2033657Domain d4p8qa3: 4p8q A:616-706 [261383]
        Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa4, d4p8qb1, d4p8qb2, d4p8qb4
        automated match to d3se6b3
        complexed with nag, unl, zn
      2. 2033658Domain d4p8qb3: 4p8q B:616-706 [263458]
        Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa4, d4p8qb1, d4p8qb2, d4p8qb4
        automated match to d4p8qa3
        complexed with nag, unl, zn
    10. Domains for 4pj6:
      1. 2033653Domain d4pj6a3: 4pj6 A:616-706 [267176]
        Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a4, d4pj6b1, d4pj6b2, d4pj6b4
        automated match to d4p8qa3
        complexed with lys, nag, zn
      2. 2033654Domain d4pj6b3: 4pj6 B:616-706 [267180]
        Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a4, d4pj6b1, d4pj6b2, d4pj6b4
        automated match to d4p8qa3
        complexed with lys, nag, zn
    11. Domains for 5cu5:
      1. 2033659Domain d5cu5a3: 5cu5 A:547-637 [277108]
        Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a4, d5cu5a5, d5cu5b1, d5cu5b2, d5cu5b4, d5cu5b5
        automated match to d3se6a3
        complexed with man, nag
      2. 2033660Domain d5cu5b3: 5cu5 B:547-637 [277112]
        Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a4, d5cu5a5, d5cu5b1, d5cu5b2, d5cu5b4, d5cu5b5
        automated match to d3se6a3
        complexed with man, nag
    12. Domain for 5j5e:
    13. Domains for 5j6s:
      1. 2287720Domain d5j6sb3: 5j6s B:547-637 [331021]
        Other proteins in same PDB: d5j6sa1, d5j6sa2, d5j6sa4, d5j6sa5, d5j6sb1, d5j6sb2, d5j6sb4, d5j6sb5
        automated match to d3se6a3
        complexed with 6ga, bma, man, nag, zn
      2. 2287732Domain d5j6sa3: 5j6s A:547-637 [331033]
        Other proteins in same PDB: d5j6sa1, d5j6sa2, d5j6sa4, d5j6sa5, d5j6sb1, d5j6sb2, d5j6sb4, d5j6sb5
        automated match to d3se6a3
        complexed with 6ga, bma, man, nag, zn
    14. Domain for 5k1v:
    15. Domains for 5lhd:
      1. 2289286Domain d5lhdc3: 5lhd C:549-636 [332587]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda4, d5lhdb1, d5lhdb2, d5lhdb4, d5lhdc1, d5lhdc2, d5lhdc4, d5lhdd1, d5lhdd2, d5lhdd4
        automated match to d4fyta3
        complexed with bma, edo, nag, zn
      2. 2289312Domain d5lhdd3: 5lhd D:549-636 [332613]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda4, d5lhdb1, d5lhdb2, d5lhdb4, d5lhdc1, d5lhdc2, d5lhdc4, d5lhdd1, d5lhdd2, d5lhdd4
        automated match to d4fyta3
        complexed with bma, edo, nag, zn
      3. 2289371Domain d5lhdb3: 5lhd B:549-636 [332672]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda4, d5lhdb1, d5lhdb2, d5lhdb4, d5lhdc1, d5lhdc2, d5lhdc4, d5lhdd1, d5lhdd2, d5lhdd4
        automated match to d4fyta3
        complexed with bma, edo, nag, zn
      4. 2289385Domain d5lhda3: 5lhd A:549-636 [332686]
        Other proteins in same PDB: d5lhda1, d5lhda2, d5lhda4, d5lhdb1, d5lhdb2, d5lhdb4, d5lhdc1, d5lhdc2, d5lhdc4, d5lhdd1, d5lhdd2, d5lhdd4
        automated match to d4fyta3
        complexed with bma, edo, nag, zn
    16. Domains for 5mj6:
      1. 2289403Domain d5mj6a3: 5mj6 A:616-706 [332704]
        Other proteins in same PDB: d5mj6a1, d5mj6a2, d5mj6a4, d5mj6a5, d5mj6b1, d5mj6b2, d5mj6b4, d5mj6b5
        automated match to d4pj6a3
        complexed with 7o2, bma, br, man, nag, zn
      2. 2289431Domain d5mj6b3: 5mj6 B:616-706 [332732]
        Other proteins in same PDB: d5mj6a1, d5mj6a2, d5mj6a4, d5mj6a5, d5mj6b1, d5mj6b2, d5mj6b4, d5mj6b5
        automated match to d4pj6a3
        complexed with 7o2, bma, br, man, nag, zn
  2. 2033661Neisseria meningitidis [TaxId:122586] [259503] (1 PDB entry)
  3. 2033663Pig (Sus scrofa) [TaxId:9823] [311379] (11 PDB entries)
    1. Domain for 4fke:
    2. Domain for 4fkh:
    3. Domain for 4fkk:
    4. Domain for 4h5h:
    5. Domain for 4hol:
    6. Domain for 4hom:
    7. Domain for 4naq:
    8. Domain for 4nz8:
    9. Domain for 4ou3:
    10. Domains for 5lds:
      1. 2289274Domain d5ldsd3: 5lds D:545-633 [332575]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa4, d5ldsb1, d5ldsb2, d5ldsb4, d5ldsc1, d5ldsc2, d5ldsc4, d5ldsd1, d5ldsd2, d5ldsd4
        automated match to d4fkha3
        complexed with act, bma, nag, zn
      2. 2289280Domain d5ldsc3: 5lds C:545-633 [332581]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa4, d5ldsb1, d5ldsb2, d5ldsb4, d5ldsc1, d5ldsc2, d5ldsc4, d5ldsd1, d5ldsd2, d5ldsd4
        automated match to d4fkha3
        complexed with act, bma, nag, zn
      3. 2289343Domain d5ldsa3: 5lds A:545-633 [332644]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa4, d5ldsb1, d5ldsb2, d5ldsb4, d5ldsc1, d5ldsc2, d5ldsc4, d5ldsd1, d5ldsd2, d5ldsd4
        automated match to d4fkha3
        complexed with act, bma, nag, zn
      4. 2289574Domain d5ldsb3: 5lds B:545-633 [332875]
        Other proteins in same PDB: d5ldsa1, d5ldsa2, d5ldsa4, d5ldsb1, d5ldsb2, d5ldsb4, d5ldsc1, d5ldsc2, d5ldsc4, d5ldsd1, d5ldsd2, d5ldsd4
        automated match to d4fkha3
        complexed with act, bma, nag, zn
    11. Domains for 5lg6:
      1. 2289617Domain d5lg6a3: 5lg6 A:545-633 [332918]
        Other proteins in same PDB: d5lg6a1, d5lg6a2, d5lg6a4, d5lg6b1, d5lg6b2, d5lg6b4
        automated match to d4fkha3
        complexed with nag, zn
      2. 2289838Domain d5lg6b3: 5lg6 B:545-633 [333139]
        Other proteins in same PDB: d5lg6a1, d5lg6a2, d5lg6a4, d5lg6b1, d5lg6b2, d5lg6b4
        automated match to d4fkha3
        complexed with nag, zn
  4. 2033673Thermoplasma acidophilum [TaxId:273075] [256034] (1 PDB entry)

More info for Protein automated matches from b.1.30.0: automated matches

Timeline for Protein automated matches from b.1.30.0: automated matches: