SCOPe 2.08: Domain d5j5ea2: 5j5e A:615-941

Lineage for d5j5ea2 (5j5e A:615-941)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.1: ARM repeat [48371] (28 families)

5. Family a.118.1.26: ERAP1 C-terminal-like [254170] (3 proteins)
   Pfam PF11838; PubMed 15893768
   this is a repeat family; one repeat unit is 2xdt A:843-881 found in domain

6. Protein automated matches [254720] (1 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [256059] (2 PDB entries)

8. Domain d5j5ea2: 5j5e A:615-941 [333161]
   Other proteins in same PDB: d5j5ea1, d5j5ea3
   automated match to d3rjoa2

Details for d5j5ea2

PDB Entry: 5j5e, 2.8 Å

PDB Description: crystal structure of antigen-erap1 domain complex

PDB Compounds: (A:) endoplasmic reticulum aminopeptidase 1

SCOPe Domain Sequences for d5j5ea2:

Sequence, based on SEQRES records:

>d5j5ea2 a.118.1.26 (A:615-941) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dgwdsltgllkgthtavssndraslinnafqlvsigklsiekaldlslylkheteimpvf
qglnelipmyklmekrdmnevetqfkaflirllrdlidkqtwtdegsvsermlrsqllll
acvhnyqpcvqraegyfrkwkesngnlslpvdvtlavfavgaqstegwdflyskyqfsls
steksqiefalcrtqnkeklqwlldesfkgdkiktqefpqiltligrnpvgyplawqflr
knwnklvqkfelgsssiahmvmgttnqfstrtrleevkgffsslkengsqlrcvqqtiet
ieenigwmdknfdkirvwlqseklerm

Sequence, based on observed residues (ATOM records):

>d5j5ea2 a.118.1.26 (A:615-941) automated matches {Human (Homo sapiens) [TaxId: 9606]}
dgwdsltgllkgthtavssndraslinnafqlvsigklsiekaldlslylkheteimpvf
qglnelipmyklmekrdmnevetqfkaflirllrdlidkqtwtdegsvsermlrsqllll
acvhnyqpcvqraegyfrkwkesngnlslpvdvtlavfavgaqstegwdflyskyqfsls
steksqiefalcrtqnkeklqwlldesfkgdkiktqefpqiltligrnpvgyplawqflr
knwnklvqkfelgsssiahmvmgttnqfstrtrleevkgffsslkensqlrcvqqtieti
eenigwmdknfdkirvwlqseklerm

Timeline for d5j5ea2:

• d5j5ea2 first appeared in SCOPe 2.06
  
• d5j5ea2 appears in SCOPe 2.07