SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2194861Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2194862Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2195231Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2195232Protein automated matches [226904] (31 species)
    not a true protein

Species:

  1. 2195233Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226104] (1 PDB entry)
  2. 2195238Aquifex aeolicus [TaxId:63363] [255713] (2 PDB entries)
    1. Domains for 2yw2:
      1. 2195239Domain d2yw2a2: 2yw2 A:102-322 [244837]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
      2. 2195240Domain d2yw2b2: 2yw2 B:102-322 [244840]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
    2. Domains for 2yya:
      1. 2195241Domain d2yyaa2: 2yya A:102-322 [244883]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
      2. 2195242Domain d2yyab2: 2yya B:102-322 [244886]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
  3. 2195243Bacillus anthracis [TaxId:198094] [226099] (1 PDB entry)
  4. 2195246Burkholderia ambifaria [TaxId:398577] [226366] (1 PDB entry)
  5. 2195249Burkholderia pseudomallei [TaxId:320372] [226352] (1 PDB entry)
  6. 2195254Burkholderia xenovorans [TaxId:266265] [226416] (1 PDB entry)
  7. 2195259Campylobacter jejuni [TaxId:192222] [256007] (2 PDB entries)
    1. Domains for 3ouu:
      1. 2195262Domain d3ouua2: 3ouu A:117-329 [248341]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouua4, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
      2. 2195263Domain d3ouub2: 3ouu B:117-329 [248344]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouua4, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 2195260Domain d3ouza2: 3ouz A:117-329 [248347]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouza4, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 2195261Domain d3ouzb2: 3ouz B:117-329 [248350]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouza4, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  8. 2195264Coxiella burnetii [TaxId:227377] [226220] (1 PDB entry)
  9. 2195267Ehrlichia chaffeensis [TaxId:205920] [255935] (1 PDB entry)
  10. 2195269Enterococcus faecalis [TaxId:1351] [226474] (1 PDB entry)
  11. 2195272Geobacillus kaustophilus [TaxId:1462] [255710] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  12. 2195277Geobacillus thermodenitrificans [TaxId:33940] [255126] (1 PDB entry)
  13. 2195280Haemophilus influenzae [TaxId:71421] [268353] (8 PDB entries)
    1. Domain for 4mv1:
    2. Domain for 4mv3:
    3. Domain for 4mv4:
    4. Domain for 4mv6:
    5. Domain for 4mv7:
    6. Domain for 4mv8:
    7. Domain for 4mv9:
    8. Domain for 4rzq:
  14. 2195289Human (Homo sapiens) [TaxId:9606] [255566] (1 PDB entry)
  15. 2195292Mycobacterium tuberculosis [TaxId:1773] [225852] (1 PDB entry)
  16. 2195295Pseudomonas aeruginosa [TaxId:287] [255073] (2 PDB entries)
    1. Domains for 2c00:
      1. 2195297Domain d2c00a2: 2c00 A:115-330 [241398]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
      2. 2195298Domain d2c00b2: 2c00 B:115-330 [241401]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
    2. Domain for 2vqd:
  17. 2195299Salmonella enterica [TaxId:90371] [226057] (1 PDB entry)
  18. 2195304Salmonella typhimurium [TaxId:90371] [225724] (1 PDB entry)
  19. 2195309Staphylococcus aureus [TaxId:1280] [225146] (3 PDB entries)
    1. Domains for 2i80:
      1. 2195310Domain d2i80a2: 2i80 A:129-356 [204738]
        Other proteins in same PDB: d2i80a1, d2i80a3, d2i80b1, d2i80b3
        automated match to d1ehib2
        complexed with g1l
      2. 2195311Domain d2i80b2: 2i80 B:129-358 [204740]
        Other proteins in same PDB: d2i80a1, d2i80a3, d2i80b1, d2i80b3
        automated match to d1ehib2
        complexed with g1l
    2. Domains for 2vpq:
      1. 2195312Domain d2vpqa2: 2vpq A:115-329 [243923]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
      2. 2195313Domain d2vpqb2: 2vpq B:115-329 [243926]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
    3. Domains for 3n8d:
      1. 2195314Domain d3n8da2: 3n8d A:129-353 [213786]
        Other proteins in same PDB: d3n8da1, d3n8db1, d3n8db3
        automated match to d1ehib2
        complexed with anp, cl, so4
      2. 2195315Domain d3n8db2: 3n8d B:129-356 [213788]
        Other proteins in same PDB: d3n8da1, d3n8db1, d3n8db3
        automated match to d1ehib2
        complexed with anp, cl, so4
  20. 2195316Staphylococcus aureus [TaxId:93062] [225144] (2 PDB entries)
    1. Domains for 2i87:
      1. 2195317Domain d2i87a2: 2i87 A:129-356 [204747]
        Other proteins in same PDB: d2i87a1, d2i87a3, d2i87b1, d2i87b3
        automated match to d1ehib2
        complexed with so4
      2. 2195318Domain d2i87b2: 2i87 B:129-358 [204749]
        Other proteins in same PDB: d2i87a1, d2i87a3, d2i87b1, d2i87b3
        automated match to d1ehib2
        complexed with so4
    2. Domains for 2i8c:
      1. 2195319Domain d2i8ca2: 2i8c A:129-356 [204751]
        Other proteins in same PDB: d2i8ca1, d2i8ca3, d2i8cb1, d2i8cb3
        automated match to d1ehib2
        complexed with adp, mg, so4
      2. 2195320Domain d2i8cb2: 2i8c B:129-358 [204753]
        Other proteins in same PDB: d2i8ca1, d2i8ca3, d2i8cb1, d2i8cb3
        automated match to d1ehib2
        complexed with adp, mg, so4
  21. 2195321Streptococcus mutans [TaxId:1309] [232666] (1 PDB entry)
  22. 2195324Thermus caldophilus [TaxId:272] [225125] (1 PDB entry)
  23. 2195326Thermus thermophilus HB8 [TaxId:300852] [225373] (6 PDB entries)
    1. Domains for 2yzg:
      1. 2195340Domain d2yzga2: 2yzg A:115-319 [207744]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      2. 2195341Domain d2yzgb2: 2yzg B:115-319 [207746]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      3. 2195342Domain d2yzgc2: 2yzg C:115-319 [207748]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
    2. Domains for 2yzm:
      1. 2195335Domain d2yzma2: 2yzm A:115-319 [207750]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      2. 2195336Domain d2yzmb2: 2yzm B:115-319 [207752]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      3. 2195337Domain d2yzmc2: 2yzm C:115-319 [207754]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
    3. Domains for 2yzn:
      1. 2195343Domain d2yzna2: 2yzn A:115-319 [207756]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      2. 2195344Domain d2yznb2: 2yzn B:115-319 [207758]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      3. 2195345Domain d2yznc2: 2yzn C:115-319 [207760]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
    4. Domains for 2zdg:
      1. 2195331Domain d2zdga2: 2zdg A:115-319 [207823]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      2. 2195332Domain d2zdgb2: 2zdg B:115-319 [207825]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      3. 2195333Domain d2zdgc2: 2zdg C:115-319 [207827]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      4. 2195334Domain d2zdgd2: 2zdg D:115-319 [207829]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
    5. Domains for 2zdh:
      1. 2195327Domain d2zdha2: 2zdh A:115-319 [207831]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      2. 2195328Domain d2zdhb2: 2zdh B:115-319 [207833]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      3. 2195329Domain d2zdhc2: 2zdh C:115-319 [207835]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      4. 2195330Domain d2zdhd2: 2zdh D:115-319 [207837]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
    6. Domains for 2zdq:
      1. 2195338Domain d2zdqa2: 2zdq A:115-319 [207839]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
      2. 2195339Domain d2zdqb2: 2zdq B:115-319 [207841]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
  24. 2195346Xanthomonas oryzae [TaxId:291331] [226136] (1 PDB entry)
  25. 2195348Xanthomonas oryzae [TaxId:342109] [225705] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  26. 2195353Yersinia pestis [TaxId:214092] [226277] (1 PDB entry)
  27. 2195356Yersinia pestis [TaxId:632] [280584] (5 PDB entries)
    1. Domains for 4zqi:
      1. 2195357Domain d4zqia2: 4zqi A:97-306 [280592]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      2. 2195358Domain d4zqib2: 4zqi B:97-306 [280590]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      3. 2195359Domain d4zqic2: 4zqi C:97-306 [280585]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      4. 2195360Domain d4zqid2: 4zqi D:97-306 [280587]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
    2. Domains for 5bpf:
      1. 2269308Domain d5bpfb2: 5bpf B:97-306 [312614]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      2. 2269344Domain d5bpfd2: 5bpf D:97-306 [312650]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      3. 2269361Domain d5bpfa2: 5bpf A:97-306 [312667]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      4. 2269377Domain d5bpfc2: 5bpf C:97-306 [312683]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
    3. Domains for 5bph:
      1. 2269297Domain d5bpha2: 5bph A:97-306 [312603]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      2. 2269306Domain d5bphc2: 5bph C:97-306 [312612]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      3. 2269310Domain d5bphd2: 5bph D:97-306 [312616]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      4. 2269333Domain d5bphb2: 5bph B:97-306 [312639]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
    4. Domains for 5c1o:
      1. 2269357Domain d5c1ob2: 5c1o B:97-306 [312663]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      2. 2269372Domain d5c1od2: 5c1o D:97-306 [312678]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      3. 2269390Domain d5c1oc2: 5c1o C:97-306 [312696]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      4. 2269394Domain d5c1oa2: 5c1o A:97-306 [312700]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
    5. Domains for 5c1p:
      1. 2269386Domain d5c1pb2: 5c1p B:97-306 [312692]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      2. 2269396Domain d5c1pa2: 5c1p A:97-306 [312702]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      3. 2269400Domain d5c1pd2: 5c1p D:97-306 [312706]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      4. 2269444Domain d5c1pc2: 5c1p C:97-306 [312750]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
  28. 2277945Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)
    1. Domains for 5d8d:
      1. 2277946Domain d5d8da2: 5d8d A:99-304 [321247]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      2. 2277948Domain d5d8dd2: 5d8d D:99-305 [321249]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      3. 2277982Domain d5d8df2: 5d8d F:99-305 [321283]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      4. 2277997Domain d5d8dc2: 5d8d C:99-304 [321298]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      5. 2278363Domain d5d8db2: 5d8d B:99-304 [321664]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      6. 2278376Domain d5d8de2: 5d8d E:99-307 [321677]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
    2. Domain for 5dmx:
  29. 2287447Mycobacterium tuberculosis [TaxId:83332] [330748] (1 PDB entry)
  30. 2289251Flaveria trinervia [TaxId:4227] [332552] (2 PDB entries)
    1. Domains for 5jvj:
      1. 2289252Domain d5jvjb1: 5jvj B:2-380 [332553]
        Other proteins in same PDB: d5jvja2, d5jvja3, d5jvjb2, d5jvjb3
        automated match to d1vbga3
        complexed with mg, pep
      2. 2289522Domain d5jvja1: 5jvj A:1-380 [332823]
        Other proteins in same PDB: d5jvja2, d5jvja3, d5jvjb2, d5jvjb3
        automated match to d1vbga3
        complexed with mg, pep
    2. Domains for 5jvl:
      1. 2289260Domain d5jvla1: 5jvl A:1-380 [332561]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
      2. 2289294Domain d5jvld1: 5jvl D:1-380 [332595]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
      3. 2289395Domain d5jvlc1: 5jvl C:1-380 [332696]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
  31. 2289327Flaveria pringlei [TaxId:4226] [332628] (1 PDB entry)

More info for Protein automated matches from d.142.1.0: automated matches

Timeline for Protein automated matches from d.142.1.0: automated matches: