Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2194861Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2194862Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2195231Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2195232Protein automated matches [226904] (32 species)
    not a true protein

Species:

  1. 2195233Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226104] (1 PDB entry)
  2. 2195238Aquifex aeolicus [TaxId:63363] [255713] (2 PDB entries)
    1. Domains for 2yw2:
      1. 2195239Domain d2yw2a2: 2yw2 A:102-322 [244837]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
      2. 2195240Domain d2yw2b2: 2yw2 B:102-322 [244840]
        Other proteins in same PDB: d2yw2a1, d2yw2a3, d2yw2b1, d2yw2b3
        automated match to d1gsoa3
        complexed with atp, po4
    2. Domains for 2yya:
      1. 2195241Domain d2yyaa2: 2yya A:102-322 [244883]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
      2. 2195242Domain d2yyab2: 2yya B:102-322 [244886]
        Other proteins in same PDB: d2yyaa1, d2yyaa3, d2yyab1, d2yyab3
        automated match to d1gsoa3
  3. 2195243Bacillus anthracis [TaxId:198094] [226099] (1 PDB entry)
  4. 2195246Burkholderia ambifaria [TaxId:398577] [226366] (1 PDB entry)
  5. 2195249Burkholderia pseudomallei [TaxId:320372] [226352] (1 PDB entry)
  6. 2195254Burkholderia xenovorans [TaxId:266265] [226416] (1 PDB entry)
  7. 2195259Campylobacter jejuni [TaxId:192222] [256007] (2 PDB entries)
    1. Domains for 3ouu:
      1. 2195262Domain d3ouua2: 3ouu A:117-329 [248341]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouua4, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
      2. 2195263Domain d3ouub2: 3ouu B:117-329 [248344]
        Other proteins in same PDB: d3ouua1, d3ouua3, d3ouua4, d3ouub1, d3ouub3
        automated match to d1ulza3
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 2195260Domain d3ouza2: 3ouz A:117-329 [248347]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouza4, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 2195261Domain d3ouzb2: 3ouz B:117-329 [248350]
        Other proteins in same PDB: d3ouza1, d3ouza3, d3ouza4, d3ouzb1, d3ouzb3
        automated match to d1ulza3
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  8. 2195264Coxiella burnetii [TaxId:227377] [226220] (1 PDB entry)
  9. 2195267Ehrlichia chaffeensis [TaxId:205920] [255935] (1 PDB entry)
  10. 2195269Enterococcus faecalis [TaxId:1351] [226474] (1 PDB entry)
  11. 2195272Geobacillus kaustophilus [TaxId:1462] [255710] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  12. 2195277Geobacillus thermodenitrificans [TaxId:33940] [255126] (1 PDB entry)
  13. 2195280Haemophilus influenzae [TaxId:71421] [268353] (8 PDB entries)
    1. Domain for 4mv1:
    2. Domain for 4mv3:
    3. Domain for 4mv4:
    4. Domain for 4mv6:
    5. Domain for 4mv7:
    6. Domain for 4mv8:
    7. Domain for 4mv9:
    8. Domain for 4rzq:
  14. 2195289Human (Homo sapiens) [TaxId:9606] [255566] (1 PDB entry)
  15. 2195292Mycobacterium tuberculosis [TaxId:1773] [225852] (1 PDB entry)
  16. 2195295Pseudomonas aeruginosa [TaxId:287] [255073] (2 PDB entries)
    1. Domains for 2c00:
      1. 2195297Domain d2c00a2: 2c00 A:115-330 [241398]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
      2. 2195298Domain d2c00b2: 2c00 B:115-330 [241401]
        Other proteins in same PDB: d2c00a1, d2c00a3, d2c00b1, d2c00b3
        automated match to d2w70a2
        complexed with so4
    2. Domain for 2vqd:
  17. 2195299Salmonella enterica [TaxId:90371] [226057] (1 PDB entry)
  18. 2195304Salmonella typhimurium [TaxId:90371] [225724] (1 PDB entry)
  19. 2195309Staphylococcus aureus [TaxId:1280] [225146] (3 PDB entries)
    1. Domains for 2i80:
      1. 2195310Domain d2i80a2: 2i80 A:129-356 [204738]
        Other proteins in same PDB: d2i80a1, d2i80a3, d2i80b1, d2i80b3
        automated match to d1ehib2
        complexed with g1l
      2. 2195311Domain d2i80b2: 2i80 B:129-358 [204740]
        Other proteins in same PDB: d2i80a1, d2i80a3, d2i80b1, d2i80b3
        automated match to d1ehib2
        complexed with g1l
    2. Domains for 2vpq:
      1. 2195312Domain d2vpqa2: 2vpq A:115-329 [243923]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
      2. 2195313Domain d2vpqb2: 2vpq B:115-329 [243926]
        Other proteins in same PDB: d2vpqa1, d2vpqa3, d2vpqb1, d2vpqb3
        automated match to d1ulza3
        complexed with anp, cl, mg
    3. Domains for 3n8d:
      1. 2195314Domain d3n8da2: 3n8d A:129-353 [213786]
        Other proteins in same PDB: d3n8da1, d3n8db1, d3n8db3
        automated match to d1ehib2
        complexed with anp, cl, so4
      2. 2195315Domain d3n8db2: 3n8d B:129-356 [213788]
        Other proteins in same PDB: d3n8da1, d3n8db1, d3n8db3
        automated match to d1ehib2
        complexed with anp, cl, so4
  20. 2195316Staphylococcus aureus [TaxId:93062] [225144] (2 PDB entries)
    1. Domains for 2i87:
      1. 2195317Domain d2i87a2: 2i87 A:129-356 [204747]
        Other proteins in same PDB: d2i87a1, d2i87a3, d2i87b1, d2i87b3
        automated match to d1ehib2
        complexed with so4
      2. 2195318Domain d2i87b2: 2i87 B:129-358 [204749]
        Other proteins in same PDB: d2i87a1, d2i87a3, d2i87b1, d2i87b3
        automated match to d1ehib2
        complexed with so4
    2. Domains for 2i8c:
      1. 2195319Domain d2i8ca2: 2i8c A:129-356 [204751]
        Other proteins in same PDB: d2i8ca1, d2i8ca3, d2i8cb1, d2i8cb3
        automated match to d1ehib2
        complexed with adp, mg, so4
      2. 2195320Domain d2i8cb2: 2i8c B:129-358 [204753]
        Other proteins in same PDB: d2i8ca1, d2i8ca3, d2i8cb1, d2i8cb3
        automated match to d1ehib2
        complexed with adp, mg, so4
  21. 2195321Streptococcus mutans [TaxId:1309] [232666] (1 PDB entry)
  22. 2195324Thermus caldophilus [TaxId:272] [225125] (1 PDB entry)
  23. 2195326Thermus thermophilus HB8 [TaxId:300852] [225373] (6 PDB entries)
    1. Domains for 2yzg:
      1. 2195340Domain d2yzga2: 2yzg A:115-319 [207744]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      2. 2195341Domain d2yzgb2: 2yzg B:115-319 [207746]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      3. 2195342Domain d2yzgc2: 2yzg C:115-319 [207748]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
    2. Domains for 2yzm:
      1. 2195335Domain d2yzma2: 2yzm A:115-319 [207750]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      2. 2195336Domain d2yzmb2: 2yzm B:115-319 [207752]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      3. 2195337Domain d2yzmc2: 2yzm C:115-319 [207754]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
    3. Domains for 2yzn:
      1. 2195343Domain d2yzna2: 2yzn A:115-319 [207756]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      2. 2195344Domain d2yznb2: 2yzn B:115-319 [207758]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      3. 2195345Domain d2yznc2: 2yzn C:115-319 [207760]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
    4. Domains for 2zdg:
      1. 2195331Domain d2zdga2: 2zdg A:115-319 [207823]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      2. 2195332Domain d2zdgb2: 2zdg B:115-319 [207825]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      3. 2195333Domain d2zdgc2: 2zdg C:115-319 [207827]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      4. 2195334Domain d2zdgd2: 2zdg D:115-319 [207829]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
    5. Domains for 2zdh:
      1. 2195327Domain d2zdha2: 2zdh A:115-319 [207831]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      2. 2195328Domain d2zdhb2: 2zdh B:115-319 [207833]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      3. 2195329Domain d2zdhc2: 2zdh C:115-319 [207835]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      4. 2195330Domain d2zdhd2: 2zdh D:115-319 [207837]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
    6. Domains for 2zdq:
      1. 2195338Domain d2zdqa2: 2zdq A:115-319 [207839]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
      2. 2195339Domain d2zdqb2: 2zdq B:115-319 [207841]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
  24. 2195346Xanthomonas oryzae [TaxId:291331] [226136] (1 PDB entry)
  25. 2195348Xanthomonas oryzae [TaxId:342109] [225705] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  26. 2195353Yersinia pestis [TaxId:214092] [226277] (1 PDB entry)
  27. 2195356Yersinia pestis [TaxId:632] [280584] (5 PDB entries)
    1. Domains for 4zqi:
      1. 2195357Domain d4zqia2: 4zqi A:97-306 [280592]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      2. 2195358Domain d4zqib2: 4zqi B:97-306 [280590]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      3. 2195359Domain d4zqic2: 4zqi C:97-306 [280585]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
      4. 2195360Domain d4zqid2: 4zqi D:97-306 [280587]
        Other proteins in same PDB: d4zqia1, d4zqib1, d4zqic1, d4zqid1
        automated match to d1iova2
        complexed with na
    2. Domains for 5bpf:
      1. 2269308Domain d5bpfb2: 5bpf B:97-306 [312614]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      2. 2269344Domain d5bpfd2: 5bpf D:97-306 [312650]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      3. 2269361Domain d5bpfa2: 5bpf A:97-306 [312667]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
      4. 2269377Domain d5bpfc2: 5bpf C:97-306 [312683]
        Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
        automated match to d1iova2
        complexed with act, adp, gol, na
    3. Domains for 5bph:
      1. 2269297Domain d5bpha2: 5bph A:97-306 [312603]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      2. 2269306Domain d5bphc2: 5bph C:97-306 [312612]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      3. 2269310Domain d5bphd2: 5bph D:97-306 [312616]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
      4. 2269333Domain d5bphb2: 5bph B:97-306 [312639]
        Other proteins in same PDB: d5bpha1, d5bphb1, d5bphc1, d5bphd1
        automated match to d1iova2
        complexed with act, amp, gol, na
    4. Domains for 5c1o:
      1. 2269357Domain d5c1ob2: 5c1o B:97-306 [312663]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      2. 2269372Domain d5c1od2: 5c1o D:97-306 [312678]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      3. 2269390Domain d5c1oc2: 5c1o C:97-306 [312696]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
      4. 2269394Domain d5c1oa2: 5c1o A:97-306 [312700]
        Other proteins in same PDB: d5c1oa1, d5c1ob1, d5c1oc1, d5c1od1
        automated match to d1iova2
        complexed with anp, mg, na
    5. Domains for 5c1p:
      1. 2269386Domain d5c1pb2: 5c1p B:97-306 [312692]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      2. 2269396Domain d5c1pa2: 5c1p A:97-306 [312702]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      3. 2269400Domain d5c1pd2: 5c1p D:97-306 [312706]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
      4. 2269444Domain d5c1pc2: 5c1p C:97-306 [312750]
        Other proteins in same PDB: d5c1pa1, d5c1pb1, d5c1pc1, d5c1pd1
        automated match to d1iova2
        complexed with act, adp, dal, gol, na
  28. 2277945Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)
    1. Domains for 5d8d:
      1. 2277946Domain d5d8da2: 5d8d A:99-304 [321247]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      2. 2277948Domain d5d8dd2: 5d8d D:99-305 [321249]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      3. 2277982Domain d5d8df2: 5d8d F:99-305 [321283]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      4. 2277997Domain d5d8dc2: 5d8d C:99-304 [321298]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      5. 2278363Domain d5d8db2: 5d8d B:99-304 [321664]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
      6. 2278376Domain d5d8de2: 5d8d E:99-307 [321677]
        Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
        automated match to d4egjc2
    2. Domain for 5dmx:
  29. 2287447Mycobacterium tuberculosis [TaxId:83332] [330748] (1 PDB entry)
  30. 2289251Flaveria trinervia [TaxId:4227] [332552] (3 PDB entries)
    1. Domains for 5jvj:
      1. 2289252Domain d5jvjb1: 5jvj B:2-380 [332553]
        Other proteins in same PDB: d5jvja2, d5jvja3, d5jvjb2, d5jvjb3
        automated match to d1vbga3
        complexed with mg, pep
      2. 2289522Domain d5jvja1: 5jvj A:1-380 [332823]
        Other proteins in same PDB: d5jvja2, d5jvja3, d5jvjb2, d5jvjb3
        automated match to d1vbga3
        complexed with mg, pep
    2. Domains for 5jvl:
      1. 2289260Domain d5jvla1: 5jvl A:1-380 [332561]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
      2. 2289294Domain d5jvld1: 5jvl D:1-380 [332595]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
      3. 2289395Domain d5jvlc1: 5jvl C:1-380 [332696]
        Other proteins in same PDB: d5jvla2, d5jvla3, d5jvlb1, d5jvlc2, d5jvlc3, d5jvld2, d5jvld3
        automated match to d1vbga3
        complexed with 6nq, mg, pep
    3. Domains for 5lu4:
      1. 2291178Domain d5lu4b1: 5lu4 B:1-380 [334479]
        Other proteins in same PDB: d5lu4a2, d5lu4a3, d5lu4b2, d5lu4b3
        automated match to d1vbga3
        complexed with adp, mg, pyr
      2. 2291187Domain d5lu4a1: 5lu4 A:1-380 [334488]
        Other proteins in same PDB: d5lu4a2, d5lu4a3, d5lu4b2, d5lu4b3
        automated match to d1vbga3
        complexed with adp, mg, pyr
  31. 2289327Flaveria pringlei [TaxId:4226] [332628] (1 PDB entry)
  32. 2289784Neisseria gonorrhoeae [TaxId:521006] [333085] (1 PDB entry)

More info for Protein automated matches from d.142.1.0: automated matches

Timeline for Protein automated matches from d.142.1.0: automated matches: