Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1432977Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 1432978Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (10 families) (S)
  5. 1433300Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 1433301Protein automated matches [226904] (18 species)
    not a true protein

Species:

  1. 1433302Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [226104] (1 PDB entry)
  2. 1433307Bacillus anthracis [TaxId:198094] [226099] (1 PDB entry)
  3. 1433310Burkholderia ambifaria [TaxId:398577] [226366] (1 PDB entry)
  4. 1433313Burkholderia pseudomallei [TaxId:320372] [226352] (1 PDB entry)
  5. 1433318Burkholderia xenovorans [TaxId:266265] [226416] (1 PDB entry)
  6. 1433323Coxiella burnetii [TaxId:227377] [226220] (1 PDB entry)
  7. 1433326Enterococcus faecalis [TaxId:1351] [226474] (1 PDB entry)
  8. 1433329Mycobacterium tuberculosis [TaxId:1773] [225852] (1 PDB entry)
  9. 1433332Salmonella enterica [TaxId:90371] [226057] (1 PDB entry)
  10. 1433337Salmonella typhimurium [TaxId:90371] [225724] (1 PDB entry)
  11. 1433342Staphylococcus aureus [TaxId:1280] [225146] (2 PDB entries)
    1. Domains for 2i80:
      1. 1433343Domain d2i80a2: 2i80 A:129-358 [204738]
        Other proteins in same PDB: d2i80a1, d2i80b1
        automated match to d1ehib2
        complexed with g1l
      2. 1433344Domain d2i80b2: 2i80 B:129-360 [204740]
        Other proteins in same PDB: d2i80a1, d2i80b1
        automated match to d1ehib2
        complexed with g1l
    2. Domains for 3n8d:
      1. 1433345Domain d3n8da2: 3n8d A:129-353 [213786]
        Other proteins in same PDB: d3n8da1, d3n8db1
        automated match to d1ehib2
        complexed with anp, cl, so4
      2. 1433346Domain d3n8db2: 3n8d B:129-358 [213788]
        Other proteins in same PDB: d3n8da1, d3n8db1
        automated match to d1ehib2
        complexed with anp, cl, so4
  12. 1433347Staphylococcus aureus [TaxId:93062] [225144] (2 PDB entries)
    1. Domains for 2i87:
      1. 1433348Domain d2i87a2: 2i87 A:129-358 [204747]
        Other proteins in same PDB: d2i87a1, d2i87b1
        automated match to d1ehib2
        complexed with so4
      2. 1433349Domain d2i87b2: 2i87 B:129-360 [204749]
        Other proteins in same PDB: d2i87a1, d2i87b1
        automated match to d1ehib2
        complexed with so4
    2. Domains for 2i8c:
      1. 1433350Domain d2i8ca2: 2i8c A:129-358 [204751]
        Other proteins in same PDB: d2i8ca1, d2i8cb1
        automated match to d1ehib2
        complexed with adp, mg, so4
      2. 1433351Domain d2i8cb2: 2i8c B:129-360 [204753]
        Other proteins in same PDB: d2i8ca1, d2i8cb1
        automated match to d1ehib2
        complexed with adp, mg, so4
  13. 1433352Streptococcus mutans [TaxId:1309] [232666] (1 PDB entry)
  14. 1433355Thermus caldophilus [TaxId:272] [225125] (1 PDB entry)
  15. 1433357Thermus thermophilus [TaxId:300852] [225373] (6 PDB entries)
    1. Domains for 2yzg:
      1. 1433371Domain d2yzga2: 2yzg A:115-319 [207744]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      2. 1433372Domain d2yzgb2: 2yzg B:115-319 [207746]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
      3. 1433373Domain d2yzgc2: 2yzg C:115-319 [207748]
        Other proteins in same PDB: d2yzga1, d2yzgb1, d2yzgc1
        automated match to d1e4ea2
    2. Domains for 2yzm:
      1. 1433366Domain d2yzma2: 2yzm A:115-319 [207750]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      2. 1433367Domain d2yzmb2: 2yzm B:115-319 [207752]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
      3. 1433368Domain d2yzmc2: 2yzm C:115-319 [207754]
        Other proteins in same PDB: d2yzma1, d2yzmb1, d2yzmc1
        automated match to d1e4ea2
        complexed with dal
    3. Domains for 2yzn:
      1. 1433374Domain d2yzna2: 2yzn A:115-319 [207756]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      2. 1433375Domain d2yznb2: 2yzn B:115-319 [207758]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
      3. 1433376Domain d2yznc2: 2yzn C:115-319 [207760]
        Other proteins in same PDB: d2yzna1, d2yznb1, d2yznc1
        automated match to d1e4ea2
        complexed with anp
    4. Domains for 2zdg:
      1. 1433362Domain d2zdga2: 2zdg A:115-319 [207823]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      2. 1433363Domain d2zdgb2: 2zdg B:115-319 [207825]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      3. 1433364Domain d2zdgc2: 2zdg C:115-319 [207827]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
      4. 1433365Domain d2zdgd2: 2zdg D:115-319 [207829]
        Other proteins in same PDB: d2zdga1, d2zdgb1, d2zdgc1, d2zdgd1
        automated match to d1e4ea2
        complexed with adp, mg
    5. Domains for 2zdh:
      1. 1433358Domain d2zdha2: 2zdh A:115-319 [207831]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      2. 1433359Domain d2zdhb2: 2zdh B:115-319 [207833]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      3. 1433360Domain d2zdhc2: 2zdh C:115-319 [207835]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
      4. 1433361Domain d2zdhd2: 2zdh D:115-319 [207837]
        Other proteins in same PDB: d2zdha1, d2zdhb1, d2zdhc1, d2zdhd1
        automated match to d1e4ea2
        complexed with adp, dal, mg
    6. Domains for 2zdq:
      1. 1433369Domain d2zdqa2: 2zdq A:115-319 [207839]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
      2. 1433370Domain d2zdqb2: 2zdq B:115-319 [207841]
        Other proteins in same PDB: d2zdqa1, d2zdqb1
        automated match to d1e4ea2
        complexed with atp, dal
  16. 1433377Xanthomonas oryzae [TaxId:291331] [226136] (1 PDB entry)
  17. 1433379Xanthomonas oryzae [TaxId:342109] [225705] (4 PDB entries)
    1. Domain for 3e5n:
    2. Domain for 3rfc:
    3. Domain for 4l1k:
    4. Domain for 4me6:
  18. 1433384Yersinia pestis [TaxId:214092] [226277] (1 PDB entry)

More info for Protein automated matches from d.142.1.0: automated matches

Timeline for Protein automated matches from d.142.1.0: automated matches: