Astral Sequences & Subsets

Most commonly requested files:

• Astral SCOPe 2.08 genetic domain sequence subsets, based on PDB SEQRES records,
  with less than 40% identity to each other: download sequences (4.1 MB)
• Astral SCOPe 2.08 genetic domain sequence subsets, based on PDB SEQRES records,
  with less than 95% identity to each other: download sequences (9.4 MB)

Other Astral resources:

• SCOPe 2.08 Sequence Resources
  • Release notes
  • SCOPe domain sequences, ATOM-based
  • SCOPe domain sequences, SEQRES-based
  • SCOPe domain subsets, based on:
    • percentage identity
    • E-value
    • SCOPe classification
  • original-style domain sequences and subsets
  • Retrieve sequences for individual SCOPe domains and PDB chains (one at a time)
  • Other sequences and subsets
  • Sequences added since the 2.08 release; last updated on 2023-01-06.
  • Pdb-style files with coordinates for each SCOPe domain
• Spaci (Summary PDB ASTRAL Check Index) scores, and AEROSPACI scores
• Pdb ATOM—SEQRES correspondence maps in Rapid Access Format.

Other Astral versions based on stable SCOP and SCOPe identifiers:

• Astral 2.08 (September 2021); release notes for 2.08
• Astral 2.07 (March 2018); release notes for 2.07
• Astral 2.06 (February 2016); release notes for 2.06
• Astral 2.05 (February 2015); release notes for 2.05
• Astral 2.04 (July 2014); release notes for 2.04
• Astral 2.03 (October 2013); release notes for 2.03
• Astral 2.02 (January 2013); release notes for 2.02
• Astral 2.01 (March 2012); release notes for 2.01
• Astral 1.75 (June 2009); release notes for 1.75
• Astral 1.73 (November 2007); release notes for 1.73
• Astral 1.71 (October 2006); release notes for 1.71
• Astral 1.69 (July 2005); release notes for 1.69
• Astral 1.67 (February 2005); release notes for 1.67
• Astral 1.65 (December 2003); release notes for 1.65
• Astral 1.63 (June 2003); release notes for 1.63
• Astral 1.61 (November 2002); release notes for 1.61
• Astral 1.59 (May 2002); release notes for 1.59
• Astral 1.57 (January 2002); release notes for 1.57
• Astral 1.55 (July 2001); release notes for 1.55

Older Astral versions not based on stable SCOP identifiers:

• SCOP 1.53 Sequence Resources, and deprecated pdb ATOM—SEQRES correspondence maps produced by pdb2cif
• SCOP 1.50 Sequence Resources
• SCOP 1.48 Sequence Resources
• SCOP 1.41 Sequence Resources
• SCOP 1.39 Sequence Resources
• Structal structural alignments from SCOP 1.38