Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2376890Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2377019Superfamily b.34.2: SH3-domain [50044] (2 families) (S)
  5. 2377020Family b.34.2.1: SH3-domain [50045] (40 protein domains)
  6. 2377400Protein automated matches [190043] (6 species)
    not a true protein

Species:

  1. 2377401Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186765] (4 PDB entries)
    1. Domain for 1ssh:
    2. Domains for 2a08:
      1. 2377403Domain d2a08a1: 2a08 A:7-62 [162641]
        Other proteins in same PDB: d2a08a2, d2a08b2
        automated match to d1oota_
      2. 2377404Domain d2a08b1: 2a08 B:7-62 [162642]
        Other proteins in same PDB: d2a08a2, d2a08b2
        automated match to d1oota_
    3. Domain for 2rpn:
    4. Domains for 2v1r:
      1. 2377405Domain d2v1ra_: 2v1r A: [152411]
        automated match to d1jqqb_
      2. 2377406Domain d2v1rb_: 2v1r B: [152412]
        automated match to d1jqqb_
  2. 2377408Chicken (Gallus gallus) [TaxId:9031] [187080] (7 PDB entries)
    1. Domain for 1u06:
    2. Domain for 2cdt:
    3. Domain for 2kr3:
    4. Domain for 2nuz:
    5. Domains for 2oaw:
      1. 2377412Domain d2oawa_: 2oaw A: [166604]
        automated match to d1bk2a_
        complexed with cl
      2. 2377413Domain d2oawb_: 2oaw B: [166605]
        automated match to d1bk2a_
        complexed with cl
      3. 2377414Domain d2oawc_: 2oaw C: [166606]
        automated match to d1bk2a_
        complexed with cl
      4. 2377415Domain d2oawd_: 2oaw D: [166607]
        automated match to d1bk2a_
        complexed with cl
    6. Domain for 2rmo:
    7. Domain for 3cqt:
  3. 2377419Fruit fly (Drosophila melanogaster) [TaxId:7227] [255023] (4 PDB entries)
    1. Domain for 2a36:
    2. Domain for 2a37:
    3. Domain for 2azs:
    4. Domain for 2azv:
  4. 2377424Human (Homo sapiens) [TaxId:9606] [187799] (31 PDB entries)
    1. Domain for 1w1f:
    2. Domain for 1wa7:
    3. Domain for 2fry:
    4. Domain for 2hda:
    5. Domain for 2kxc:
    6. Domain for 2lnh:
    7. Domain for 2vvk:
    8. Domain for 2yuq:
    9. Domain for 3eg0:
    10. Domain for 3eg2:
    11. Domain for 3eg3:
    12. Domain for 3egu:
    13. Domain for 3i35:
    14. Domain for 3i5r:
    15. Domains for 3i5s:
      1. 2377454Domain d3i5sa_: 3i5s A: [246721]
        automated match to d1pnja_
        complexed with so4
      2. 2377455Domain d3i5sb_: 3i5s B: [246722]
        automated match to d1pnja_
        complexed with so4
      3. 2377456Domain d3i5sc_: 3i5s C: [246723]
        automated match to d1pnja_
        complexed with so4
      4. 2377457Domain d3i5sd_: 3i5s D: [246724]
        automated match to d1pnja_
        complexed with so4
    16. Domain for 3rnj:
    17. Domain for 4eik:
    18. Domain for 4j9b:
    19. Domains for 4j9f:
      1. 2377425Domain d4j9fa_: 4j9f A: [252844]
        automated match to d4jjba_
        complexed with gol, so4
      2. 2377426Domain d4j9fc_: 4j9f C: [252845]
        automated match to d4jjba_
        complexed with gol, so4
      3. 2377427Domain d4j9fe_: 4j9f E: [252846]
        automated match to d4jjca_
        complexed with gol, so4
    20. Domains for 4j9i:
      1. 2377450Domain d4j9ia_: 4j9i A: [236426]
        automated match to d3eg2a_
        complexed with gol
      2. 2377451Domain d4j9ic_: 4j9i C: [236427]
        automated match to d3eg2a_
        complexed with gol
    21. Domain for 4jjb:
    22. Domain for 4jjc:
    23. Domain for 4jjd:
    24. Domain for 5fw9:
    25. Domain for 5fwb:
    26. Domain for 5fwc:
    27. Domain for 5i22:
    28. Domain for 5mo4:
    29. Domains for 5np2:
      1. 3052220Domain d5np2b1: 5np2 B:64-120 [352282]
        Other proteins in same PDB: d5np2a2, d5np2b2
        automated match to d1fyna_
      2. 3052236Domain d5np2a1: 5np2 A:64-119 [352298]
        Other proteins in same PDB: d5np2a2, d5np2b2
        automated match to d1fyna_
    30. Domains for 5oaz:
      1. 2377428Domain d5oaza_: 5oaz A: [336624]
        automated match to d3eg2a_
        complexed with peg
      2. 2377429Domain d5oazb_: 5oaz B: [336640]
        automated match to d3eg2a_
        complexed with peg
    31. Domains for 5sxp:
      1. 2377445Domain d5sxpa_: 5sxp A: [330481]
        automated match to d2ak5a_
      2. 2377446Domain d5sxpb_: 5sxp B: [330438]
        automated match to d2ak5a_
      3. 2377447Domain d5sxpc_: 5sxp C: [330473]
        automated match to d2ak5a_
      4. 2377448Domain d5sxpd_: 5sxp D: [330432]
        automated match to d2ak5a_
  5. 2377465Mouse (Mus musculus) [TaxId:10090] [187043] (7 PDB entries)
    1. Domains for 2d0n:
      1. 2377466Domain d2d0na2: 2d0n A:267-322 [131073]
        Other proteins in same PDB: d2d0na3, d2d0nc3
        automated match to d1h3ha_
      2. 2377467Domain d2d0nc2: 2d0n C:267-321 [131074]
        Other proteins in same PDB: d2d0na3, d2d0nc3
        automated match to d1h3ha_
    2. Domains for 2esw:
      1. 2377470Domain d2eswa1: 2esw A:5-61 [197884]
        Other proteins in same PDB: d2eswa2
        automated match to d2eswb_
        complexed with cl, hg
      2. 2377471Domain d2eswb_: 2esw B: [193825]
        Other proteins in same PDB: d2eswa2
        automated match to d2ak5b_
        complexed with cl, hg
    3. Domain for 2k79:
    4. Domain for 2k7a:
    5. Domain for 2rn8:
    6. Domain for 2rna:
    7. Domains for 2w10:
      1. 2377468Domain d2w10a_: 2w10 A: [168992]
        automated match to d1h3ha_
        complexed with po4
      2. 2377469Domain d2w10b_: 2w10 B: [168993]
        automated match to d1h3ha_
        complexed with po4
  6. 2377476Norway rat (Rattus norvegicus) [TaxId:10116] [187407] (7 PDB entries)
    1. Domain for 1y0m:
    2. Domain for 1ywo:
    3. Domain for 1ywp:
    4. Domains for 2ak5:
      1. 2377483Domain d2ak5a_: 2ak5 A: [162824]
        Other proteins in same PDB: d2ak5b2
        automated match to d1ujya_
      2. 2377484Domain d2ak5b1: 2ak5 B:5-66 [162825]
        Other proteins in same PDB: d2ak5b2
        automated match to d1ujya_
    5. Domain for 2g6f:
    6. Domain for 2p4r:
    7. Domains for 3thk:
      1. 2377480Domain d3thka_: 3thk A: [185837]
        automated match to d1pwta_
        complexed with bme, so4
      2. 2377481Domain d3thkb_: 3thk B: [185838]
        automated match to d1pwta_
        complexed with bme, so4

More info for Protein automated matches from b.34.2.1: SH3-domain

Timeline for Protein automated matches from b.34.2.1: SH3-domain: