Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. Superfamily b.34.2: SH3-domain [50044] (2 families) (S)
  5. Family b.34.2.1: SH3-domain [50045] (40 proteins)
  6. Protein automated matches [190043] (8 species)
    not a true protein

Species:

  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186765] (4 PDB entries)
    1. Domain for 1ssh:
    2. Domains for 2a08:
      1. Domain d2a08a1: 2a08 A:7-62 [162641]
        Other proteins in same PDB: d2a08a2, d2a08b2
        automated match to d1oota_
      2. Domain d2a08b1: 2a08 B:7-62 [162642]
        Other proteins in same PDB: d2a08a2, d2a08b2
        automated match to d1oota_
    3. Domain for 2rpn:
    4. Domains for 2v1r:
      1. Domain d2v1ra_: 2v1r A: [152411]
        automated match to d1jqqb_
      2. Domain d2v1rb_: 2v1r B: [152412]
        automated match to d1jqqb_
  2. Chicken (Gallus gallus) [TaxId:9031] [187080] (10 PDB entries)
    1. Domain for 1u06:
    2. Domain for 2cdt:
    3. Domain for 2kr3:
    4. Domain for 2nuz:
    5. Domains for 2oaw:
      1. Domain d2oawa_: 2oaw A: [166604]
        automated match to d1bk2a_
        complexed with cl
      2. Domain d2oawb_: 2oaw B: [166605]
        automated match to d1bk2a_
        complexed with cl
      3. Domain d2oawc_: 2oaw C: [166606]
        automated match to d1bk2a_
        complexed with cl
      4. Domain d2oawd_: 2oaw D: [166607]
        automated match to d1bk2a_
        complexed with cl
    6. Domain for 2rmo:
    7. Domain for 3cqt:
    8. Domain for 7ner:
    9. Domain for 7nes:
    10. Domains for 7net:
      1. Domain d7neta_: 7net A: [405792]
        automated match to d3ua6b_
        complexed with peg, pge, so4; mutant
      2. Domain d7netb_: 7net B: [405842]
        automated match to d3ua6b_
        complexed with peg, pge, so4; mutant
  3. Fruit fly (Drosophila melanogaster) [TaxId:7227] [255023] (4 PDB entries)
    1. Domain for 2a36:
    2. Domain for 2a37:
    3. Domain for 2azs:
    4. Domain for 2azv:
  4. Human (Homo sapiens) [TaxId:9606] [187799] (37 PDB entries)
    1. Domain for 1w1f:
    2. Domain for 1wa7:
    3. Domain for 2fry:
    4. Domain for 2hda:
    5. Domain for 2kxc:
    6. Domain for 2lnh:
    7. Domain for 2vvk:
    8. Domain for 2yuq:
    9. Domain for 3eg0:
    10. Domain for 3eg2:
    11. Domain for 3eg3:
    12. Domain for 3egu:
    13. Domain for 3i35:
    14. Domain for 3i5r:
    15. Domains for 3i5s:
      1. Domain d3i5sa_: 3i5s A: [246721]
        automated match to d1pnja_
        complexed with so4
      2. Domain d3i5sb_: 3i5s B: [246722]
        automated match to d1pnja_
        complexed with so4
      3. Domain d3i5sc_: 3i5s C: [246723]
        automated match to d1pnja_
        complexed with so4
      4. Domain d3i5sd_: 3i5s D: [246724]
        automated match to d1pnja_
        complexed with so4
    16. Domain for 3rnj:
    17. Domain for 4eik:
    18. Domain for 4j9b:
    19. Domains for 4j9f:
      1. Domain d4j9fa_: 4j9f A: [252844]
        automated match to d4jjba_
        complexed with gol, so4
      2. Domain d4j9fc_: 4j9f C: [252845]
        automated match to d4jjba_
        complexed with gol, so4
      3. Domain d4j9fe_: 4j9f E: [252846]
        automated match to d4jjca_
        complexed with gol, so4
    20. Domains for 4j9i:
      1. Domain d4j9ia_: 4j9i A: [236426]
        automated match to d3eg2a_
        complexed with gol
      2. Domain d4j9ic_: 4j9i C: [236427]
        automated match to d3eg2a_
        complexed with gol
    21. Domain for 4jjb:
    22. Domain for 4jjc:
    23. Domain for 4jjd:
    24. Domain for 5fw9:
    25. Domain for 5fwb:
    26. Domain for 5fwc:
    27. Domain for 5i22:
    28. Domain for 5mo4:
    29. Domains for 5np2:
      1. Domain d5np2a1: 5np2 A:64-119 [352298]
        Other proteins in same PDB: d5np2a2, d5np2b2
        automated match to d1fyna_
      2. Domain d5np2b1: 5np2 B:64-120 [352282]
        Other proteins in same PDB: d5np2a2, d5np2b2
        automated match to d1fyna_
    30. Domains for 5oaz:
      1. Domain d5oaza_: 5oaz A: [336624]
        automated match to d3eg2a_
        complexed with peg
      2. Domain d5oazb_: 5oaz B: [336640]
        automated match to d3eg2a_
        complexed with peg
    31. Domains for 5qu1:
      1. Domain d5qu1a_: 5qu1 A: [380487]
        automated match to d2b86a_
        complexed with so4
      2. Domain d5qu1b_: 5qu1 B: [380470]
        automated match to d2b86a_
        complexed with so4
    32. Domains for 5qu3:
      1. Domain d5qu3a1: 5qu3 A:5-60 [380545]
        Other proteins in same PDB: d5qu3a2, d5qu3b2
        automated match to d2b86a_
      2. Domain d5qu3b1: 5qu3 B:5-59 [380484]
        Other proteins in same PDB: d5qu3a2, d5qu3b2
        automated match to d2b86a_
    33. Domains for 5qu7:
      1. Domain d5qu7a1: 5qu7 A:5-60 [403858]
        Other proteins in same PDB: d5qu7a2, d5qu7b2
        automated match to d2b86a_
      2. Domain d5qu7b1: 5qu7 B:5-60 [403831]
        Other proteins in same PDB: d5qu7a2, d5qu7b2
        automated match to d2b86a_
    34. Domains for 5sxp:
      1. Domain d5sxpa_: 5sxp A: [330481]
        automated match to d2ak5a_
      2. Domain d5sxpb_: 5sxp B: [330438]
        automated match to d2ak5a_
      3. Domain d5sxpc_: 5sxp C: [330473]
        automated match to d2ak5a_
      4. Domain d5sxpd_: 5sxp D: [330432]
        automated match to d2ak5a_
    35. Domain for 6edf:
    36. Domain for 6nmw:
    37. Domains for 6sdf:
      1. Domain d6sdfa1: 6sdf A:3-60 [379681]
        Other proteins in same PDB: d6sdfa2, d6sdfa3, d6sdfb2
        automated match to d2a37a_
        complexed with cl, mpd
      2. Domain d6sdfb1: 6sdf B:3-58 [379735]
        Other proteins in same PDB: d6sdfa2, d6sdfa3, d6sdfb2
        automated match to d2a37a_
        complexed with cl, mpd
  5. Mola mola [TaxId:94237] [386993] (1 PDB entry)
  6. Mouse (Mus musculus) [TaxId:10090] [187043] (7 PDB entries)
    1. Domains for 2d0n:
      1. Domain d2d0na2: 2d0n A:267-322 [131073]
        Other proteins in same PDB: d2d0na3, d2d0nc3
        automated match to d1h3ha_
      2. Domain d2d0nc2: 2d0n C:267-321 [131074]
        Other proteins in same PDB: d2d0na3, d2d0nc3
        automated match to d1h3ha_
    2. Domains for 2esw:
      1. Domain d2eswa1: 2esw A:5-61 [197884]
        Other proteins in same PDB: d2eswa2
        automated match to d2eswb_
        complexed with cl, hg
      2. Domain d2eswb_: 2esw B: [193825]
        Other proteins in same PDB: d2eswa2
        automated match to d2ak5b_
        complexed with cl, hg
    3. Domain for 2k79:
    4. Domain for 2k7a:
    5. Domain for 2rn8:
    6. Domain for 2rna:
    7. Domains for 2w10:
      1. Domain d2w10a_: 2w10 A: [168992]
        automated match to d1h3ha_
        complexed with po4
      2. Domain d2w10b_: 2w10 B: [168993]
        automated match to d1h3ha_
        complexed with po4
  7. Norway rat (Rattus norvegicus) [TaxId:10116] [187407] (7 PDB entries)
    1. Domain for 1y0m:
    2. Domain for 1ywo:
    3. Domain for 1ywp:
    4. Domains for 2ak5:
      1. Domain d2ak5a_: 2ak5 A: [162824]
        Other proteins in same PDB: d2ak5b2
        automated match to d1ujya_
      2. Domain d2ak5b1: 2ak5 B:5-66 [162825]
        Other proteins in same PDB: d2ak5b2
        automated match to d1ujya_
    5. Domain for 2g6f:
    6. Domain for 2p4r:
    7. Domains for 3thk:
      1. Domain d3thka_: 3thk A: [185837]
        automated match to d1pwta_
        complexed with bme, so4
      2. Domain d3thkb_: 3thk B: [185838]
        automated match to d1pwta_
        complexed with bme, so4
  8. Pig (Sus scrofa) [TaxId:9823] [391473] (1 PDB entry)

More info for Protein automated matches from b.34.2.1: SH3-domain

Timeline for Protein automated matches from b.34.2.1: SH3-domain: