SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.34: SH3-like barrel [50036] (21 superfamilies)
barrel, partly opened; n*=4, S*=8; meander
the last strand is interrupted by a turn of 3-10 helix
Superfamily b.34.2: SH3-domain [50044] (2 families)
Family b.34.2.1: SH3-domain [50045] (40 proteins)
Protein automated matches [190043] (8 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186765] (4 PDB entries)
1. Domain for 1ssh:
  - Domain d1ssha2: 1ssh A:2-60 [119048]
    Other proteins in same PDB: d1ssha3
    automated match to d1oota_
2. Domains for 2a08:
  1. Domain d2a08a1: 2a08 A:7-62 [162641]
    Other proteins in same PDB: d2a08a2, d2a08b2
    automated match to d1oota_
  2. Domain d2a08b1: 2a08 B:7-62 [162642]
    Other proteins in same PDB: d2a08a2, d2a08b2
    automated match to d1oota_
3. Domain for 2rpn:
  - Domain d2rpna1: 2rpn A:2-59 [243742]
    Other proteins in same PDB: d2rpna2
    automated match to d1jo8a_
4. Domains for 2v1r:
  1. Domain d2v1ra_: 2v1r A: [152411]
    automated match to d1jqqb_
  2. Domain d2v1rb_: 2v1r B: [152412]
    automated match to d1jqqb_
Chicken (Gallus gallus) [TaxId:9031] [187080] (10 PDB entries)
1. Domain for 1u06:
  - Domain d1u06a_: 1u06 A: [119404]
    automated match to d1pwt__
    complexed with azi
2. Domain for 2cdt:
  - Domain d2cdta_: 2cdt A: [130296]
    automated match to d1pwt__
    mutant
3. Domain for 2kr3:
  - Domain d2kr3a_: 2kr3 A: [242623]
    automated match to d2f2va_
4. Domain for 2nuz:
  - Domain d2nuza_: 2nuz A: [138624]
    automated match to d1pwt__
5. Domains for 2oaw:
  1. Domain d2oawa_: 2oaw A: [166604]
    automated match to d1bk2a_
    complexed with cl
  2. Domain d2oawb_: 2oaw B: [166605]
    automated match to d1bk2a_
    complexed with cl
  3. Domain d2oawc_: 2oaw C: [166606]
    automated match to d1bk2a_
    complexed with cl
  4. Domain d2oawd_: 2oaw D: [166607]
    automated match to d1bk2a_
    complexed with cl
6. Domain for 2rmo:
  - Domain d2rmoa_: 2rmo A: [243725]
    automated match to d2f2va_
7. Domain for 3cqt:
  - Domain d3cqta1: 3cqt A:2-58 [173419]
    Other proteins in same PDB: d3cqta2
    automated match to d1m27c_
    mutant
8. Domain for 7ner:
  - Domain d7nera_: 7ner A: [405803]
    automated match to d3ua6b_
    complexed with pg4, so4; mutant
9. Domain for 7nes:
  - Domain d7nesa_: 7nes A: [405748]
    automated match to d3ua6b_
    complexed with gly; mutant
10. Domains for 7net:
  1. Domain d7neta_: 7net A: [405792]
    automated match to d3ua6b_
    complexed with peg, pge, so4; mutant
  2. Domain d7netb_: 7net B: [405842]
    automated match to d3ua6b_
    complexed with peg, pge, so4; mutant
Fruit fly (Drosophila melanogaster) [TaxId:7227] [255023] (4 PDB entries)
1. Domain for 2a36:
  - Domain d2a36a_: 2a36 A: [241203]
    automated match to d1gbra_
2. Domain for 2a37:
  - Domain d2a37a_: 2a37 A: [241204]
    automated match to d1gbra_
    mutant
3. Domain for 2azs:
  - Domain d2azsa_: 2azs A: [241244]
    automated match to d1gbra_
4. Domain for 2azv:
  - Domain d2azva_: 2azv A: [241245]
    automated match to d1gbra_
    mutant
Human (Homo sapiens) [TaxId:9606] [187799] (37 PDB entries)
1. Domain for 1w1f:
  - Domain d1w1fa_: 1w1f A: [240889]
    automated match to d1h92a_
2. Domain for 1wa7:
  - Domain d1wa7a_: 1wa7 A: [240895]
    automated match to d1h92a_
3. Domain for 2fry:
  - Domain d2frya1: 2fry A:3-61 [241881]
    Other proteins in same PDB: d2frya2
    automated match to d1u5sa1
4. Domain for 2hda:
  - Domain d2hdaa_: 2hda A: [165051]
    automated match to d1fyna_
    complexed with so4
5. Domain for 2kxc:
  - Domain d2kxca1: 2kxc A:339-402 [242689]
    Other proteins in same PDB: d2kxca2
    automated match to d3rnja_
6. Domain for 2lnh:
  - Domain d2lnhb1: 2lnh B:69-132 [242943]
    Other proteins in same PDB: d2lnhb2
    automated match to d3rnja_
7. Domain for 2vvk:
  - Domain d2vvka1: 2vvk A:3-56 [168869]
    Other proteins in same PDB: d2vvka2
    automated match to d1gcqb_
    complexed with gol
8. Domain for 2yuq:
  - Domain d2yuqa1: 2yuq A:8-85 [244832]
    Other proteins in same PDB: d2yuqa2
    automated match to d1awja_
9. Domain for 3eg0:
  - Domain d3eg0a_: 3eg0 A: [209490]
    automated match to d1ju5c_
    complexed with gol; mutant
10. Domain for 3eg2:
  - Domain d3eg2a_: 3eg2 A: [209491]
    automated match to d1ju5c_
    complexed with gol; mutant
11. Domain for 3eg3:
  - Domain d3eg3a1: 3eg3 A:60-121 [209492]
    Other proteins in same PDB: d3eg3a2
    automated match to d1ju5c_
    complexed with gol; mutant
12. Domain for 3egu:
  - Domain d3egua_: 3egu A: [209501]
    automated match to d1ju5c_
    complexed with gol, so4; mutant
13. Domain for 3i35:
  - Domain d3i35a_: 3i35 A: [178038]
    automated match to d1arka_
14. Domain for 3i5r:
  - Domain d3i5ra_: 3i5r A: [178104]
    automated match to d1pnja_
15. Domains for 3i5s:
  1. Domain d3i5sa_: 3i5s A: [246721]
    automated match to d1pnja_
    complexed with so4
  2. Domain d3i5sb_: 3i5s B: [246722]
    automated match to d1pnja_
    complexed with so4
  3. Domain d3i5sc_: 3i5s C: [246723]
    automated match to d1pnja_
    complexed with so4
  4. Domain d3i5sd_: 3i5s D: [246724]
    automated match to d1pnja_
    complexed with so4
16. Domain for 3rnj:
  - Domain d3rnja1: 3rnj A:375-436 [185062]
    Other proteins in same PDB: d3rnja2
    automated match to d1spka_
    complexed with edo, edt, ipa
17. Domain for 4eik:
  - Domain d4eika_: 4eik A: [196768]
    automated match to d1fyna_
    complexed with na
18. Domain for 4j9b:
  - Domain d4j9ba_: 4j9b A: [236428]
    automated match to d3eg2a_
    complexed with peg; mutant
19. Domains for 4j9f:
  1. Domain d4j9fa_: 4j9f A: [252844]
    automated match to d4jjba_
    complexed with gol, so4
  2. Domain d4j9fc_: 4j9f C: [252845]
    automated match to d4jjba_
    complexed with gol, so4
  3. Domain d4j9fe_: 4j9f E: [252846]
    automated match to d4jjca_
    complexed with gol, so4
20. Domains for 4j9i:
  1. Domain d4j9ia_: 4j9i A: [236426]
    automated match to d3eg2a_
    complexed with gol
  2. Domain d4j9ic_: 4j9i C: [236427]
    automated match to d3eg2a_
    complexed with gol
21. Domain for 4jjb:
  - Domain d4jjba_: 4jjb A: [237613]
    automated match to d4j9ia_
    complexed with peg, so4
22. Domain for 4jjc:
  - Domain d4jjca_: 4jjc A: [237614]
    automated match to d4j9ia_
    complexed with peg
23. Domain for 4jjd:
  - Domain d4jjda1: 4jjd A:60-121 [237615]
    Other proteins in same PDB: d4jjda2
    automated match to d3eg3a_
    complexed with na, peg; mutant
24. Domain for 5fw9:
  - Domain d5fw9a_: 5fw9 A: [327563]
    automated match to d2f2va_
25. Domain for 5fwb:
  - Domain d5fwba1: 5fwb A:2-60 [327578]
    Other proteins in same PDB: d5fwba2
    automated match to d2f2va_
26. Domain for 5fwc:
  - Domain d5fwca1: 5fwc A:6-59 [327617]
    Other proteins in same PDB: d5fwca2
    automated match to d2f2va_
    complexed with edo, nh4
27. Domain for 5i22:
  - Domain d5i22a_: 5i22 A: [318457]
    automated match to d1mv0b_
28. Domain for 5mo4:
  - Domain d5mo4a1: 5mo4 A:83-139 [332639]
    Other proteins in same PDB: d5mo4a2, d5mo4a3
    automated match to d1opka1
    complexed with ay7, nil
29. Domains for 5np2:
  1. Domain d5np2a1: 5np2 A:64-119 [352298]
    Other proteins in same PDB: d5np2a2, d5np2b2
    automated match to d1fyna_
  2. Domain d5np2b1: 5np2 B:64-120 [352282]
    Other proteins in same PDB: d5np2a2, d5np2b2
    automated match to d1fyna_
30. Domains for 5oaz:
  1. Domain d5oaza_: 5oaz A: [336624]
    automated match to d3eg2a_
    complexed with peg
  2. Domain d5oazb_: 5oaz B: [336640]
    automated match to d3eg2a_
    complexed with peg
31. Domains for 5qu1:
  1. Domain d5qu1a_: 5qu1 A: [380487]
    automated match to d2b86a_
    complexed with so4
  2. Domain d5qu1b_: 5qu1 B: [380470]
    automated match to d2b86a_
    complexed with so4
32. Domains for 5qu3:
  1. Domain d5qu3a1: 5qu3 A:5-60 [380545]
    Other proteins in same PDB: d5qu3a2, d5qu3b2
    automated match to d2b86a_
  2. Domain d5qu3b1: 5qu3 B:5-59 [380484]
    Other proteins in same PDB: d5qu3a2, d5qu3b2
    automated match to d2b86a_
33. Domains for 5qu7:
  1. Domain d5qu7a1: 5qu7 A:5-60 [403858]
    Other proteins in same PDB: d5qu7a2, d5qu7b2
    automated match to d2b86a_
  2. Domain d5qu7b1: 5qu7 B:5-60 [403831]
    Other proteins in same PDB: d5qu7a2, d5qu7b2
    automated match to d2b86a_
34. Domains for 5sxp:
  1. Domain d5sxpa_: 5sxp A: [330481]
    automated match to d2ak5a_
  2. Domain d5sxpb_: 5sxp B: [330438]
    automated match to d2ak5a_
  3. Domain d5sxpc_: 5sxp C: [330473]
    automated match to d2ak5a_
  4. Domain d5sxpd_: 5sxp D: [330432]
    automated match to d2ak5a_
35. Domain for 6edf:
  - Domain d6edfa_: 6edf A: [356845]
    automated match to d1m27c_
    complexed with gol, unx
36. Domain for 6nmw:
  - Domain d6nmwa_: 6nmw A: [367872]
    automated match to d1w1fa_
37. Domains for 6sdf:
  1. Domain d6sdfa1: 6sdf A:3-60 [379681]
    Other proteins in same PDB: d6sdfa2, d6sdfa3, d6sdfb2
    automated match to d2a37a_
    complexed with cl, mpd
  2. Domain d6sdfb1: 6sdf B:3-58 [379735]
    Other proteins in same PDB: d6sdfa2, d6sdfa3, d6sdfb2
    automated match to d2a37a_
    complexed with cl, mpd
Mola mola [TaxId:94237] [386993] (1 PDB entry)
- Domain for 6ro9:
  - Domain d6ro9a_: 6ro9 A: [386994]
    automated match to d2f2va_
Mouse (Mus musculus) [TaxId:10090] [187043] (7 PDB entries)
1. Domains for 2d0n:
  1. Domain d2d0na2: 2d0n A:267-322 [131073]
    Other proteins in same PDB: d2d0na3, d2d0nc3
    automated match to d1h3ha_
  2. Domain d2d0nc2: 2d0n C:267-321 [131074]
    Other proteins in same PDB: d2d0na3, d2d0nc3
    automated match to d1h3ha_
2. Domains for 2esw:
  1. Domain d2eswa1: 2esw A:5-61 [197884]
    Other proteins in same PDB: d2eswa2
    automated match to d2eswb_
    complexed with cl, hg
  2. Domain d2eswb_: 2esw B: [193825]
    Other proteins in same PDB: d2eswa2
    automated match to d2ak5b_
    complexed with cl, hg
3. Domain for 2k79:
  - Domain d2k79a1: 2k79 A:171-231 [242391]
    Other proteins in same PDB: d2k79a2, d2k79b1, d2k79b2
    automated match to d3h0ha_
4. Domain for 2k7a:
  - Domain d2k7aa1: 2k7a A:171-231 [242393]
    Other proteins in same PDB: d2k7aa2, d2k7ab1, d2k7ab2
    automated match to d3h0ha_
5. Domain for 2rn8:
  - Domain d2rn8a2: 2rn8 A:171-232 [152170]
    Other proteins in same PDB: d2rn8a3
    automated match to d3h0ha_
6. Domain for 2rna:
  - Domain d2rnaa2: 2rna A:171-232 [152171]
    Other proteins in same PDB: d2rnaa3
    automated match to d3h0ha_
7. Domains for 2w10:
  1. Domain d2w10a_: 2w10 A: [168992]
    automated match to d1h3ha_
    complexed with po4
  2. Domain d2w10b_: 2w10 B: [168993]
    automated match to d1h3ha_
    complexed with po4
Norway rat (Rattus norvegicus) [TaxId:10116] [187407] (7 PDB entries)
1. Domain for 1y0m:
  - Domain d1y0ma_: 1y0m A: [162125]
    automated match to d1hsqa_
2. Domain for 1ywo:
  - Domain d1ywoa_: 1ywo A: [162316]
    automated match to d1hsqa_
3. Domain for 1ywp:
  - Domain d1ywpa1: 1ywp A:1-61 [162317]
    Other proteins in same PDB: d1ywpa2
    automated match to d1hsqa_
4. Domains for 2ak5:
  1. Domain d2ak5a_: 2ak5 A: [162824]
    Other proteins in same PDB: d2ak5b2
    automated match to d1ujya_
  2. Domain d2ak5b1: 2ak5 B:5-66 [162825]
    Other proteins in same PDB: d2ak5b2
    automated match to d1ujya_
5. Domain for 2g6f:
  - Domain d2g6fx1: 2g6f X:10-63 [204299]
    Other proteins in same PDB: d2g6fx2
    automated match to d2p4ra_
    complexed with nco
6. Domain for 2p4r:
  - Domain d2p4ra1: 2p4r A:10-63 [193377]
    Other proteins in same PDB: d2p4ra2
    automated match to d2ak5b_
    complexed with gol, so4
7. Domains for 3thk:
  1. Domain d3thka_: 3thk A: [185837]
    automated match to d1pwta_
    complexed with bme, so4
  2. Domain d3thkb_: 3thk B: [185838]
    automated match to d1pwta_
    complexed with bme, so4
Pig (Sus scrofa) [TaxId:9823] [391473] (1 PDB entry)
- Domain for 6scw:
  - Domain d6scwa1: 6scw A:2-62 [391474]
    Other proteins in same PDB: d6scwa2
    automated match to d2f2va_

More info for Protein automated matches from b.34.2.1: SH3-domain

Timeline for Protein automated matches from b.34.2.1: SH3-domain:

Protein automated matches from b.34.2.1: SH3-domain first appeared in SCOPe 2.01
Protein automated matches from b.34.2.1: SH3-domain appears in SCOPe 2.07