Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3024792Fold f.23: Single transmembrane helix [81407] (42 superfamilies)
    not a true fold
    annotated by the SCOP(e) curators as 'not a true fold'
  4. 3025862Superfamily f.23.12: ISP transmembrane anchor [81502] (2 families) (S)
  5. 3025917Family f.23.12.0: automated matches [254198] (1 protein)
    not a true family
  6. 3025918Protein automated matches [254432] (4 species)
    not a true protein

Species:

  1. 3025919Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [257475] (2 PDB entries)
    1. Domain for 4pd4:
    2. Domains for 6ymx:
      1. 3025920Domain d6ymxe1: 6ymx E:31-86 [393772]
        Other proteins in same PDB: d6ymxa1, d6ymxa2, d6ymxb1, d6ymxb2, d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxl1, d6ymxl2, d6ymxm1, d6ymxm2, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5e2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
      2. 3025921Domain d6ymxp1: 6ymx P:31-86 [393690]
        Other proteins in same PDB: d6ymxa1, d6ymxa2, d6ymxb1, d6ymxb2, d6ymxc_, d6ymxd1, d6ymxd2, d6ymxe2, d6ymxf_, d6ymxg_, d6ymxh_, d6ymxi_, d6ymxj_, d6ymxl1, d6ymxl2, d6ymxm1, d6ymxm2, d6ymxn1, d6ymxn2, d6ymxo1, d6ymxo2, d6ymxp2, d6ymxq_, d6ymxr_, d6ymxs_, d6ymxt_
        automated match to d3cx5e2
        complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, cu, cua, fes, hea, hem, pcf, pty, uq6, zn
  2. 3025923Chicken (Gallus gallus) [TaxId:9031] [260678] (8 PDB entries)
    1. Domains for 3h1h:
      1. 3025936Domain d3h1he1: 3h1h E:1-69 [262282]
        Other proteins in same PDB: d3h1ha1, d3h1ha2, d3h1hb1, d3h1hb2, d3h1hc1, d3h1hc2, d3h1hd1, d3h1hd2, d3h1he2, d3h1hf_, d3h1hg_, d3h1hh_, d3h1hj_, d3h1hn1, d3h1hn2, d3h1ho1, d3h1ho2, d3h1hp1, d3h1hp2, d3h1hq1, d3h1hq2, d3h1hr2, d3h1hs_, d3h1ht_, d3h1hu_, d3h1hw_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, pee, unl, uq
      2. 3025937Domain d3h1hr1: 3h1h R:1-69 [262284]
        Other proteins in same PDB: d3h1ha1, d3h1ha2, d3h1hb1, d3h1hb2, d3h1hc1, d3h1hc2, d3h1hd1, d3h1hd2, d3h1he2, d3h1hf_, d3h1hg_, d3h1hh_, d3h1hj_, d3h1hn1, d3h1hn2, d3h1ho1, d3h1ho2, d3h1hp1, d3h1hp2, d3h1hq1, d3h1hq2, d3h1hr2, d3h1hs_, d3h1ht_, d3h1hu_, d3h1hw_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, pee, unl, uq
    2. Domains for 3h1j:
      1. 3025938Domain d3h1je1: 3h1j E:1-69 [262286]
        Other proteins in same PDB: d3h1ja1, d3h1ja2, d3h1jb1, d3h1jb2, d3h1jc1, d3h1jc2, d3h1jd1, d3h1jd2, d3h1je2, d3h1jf_, d3h1jg_, d3h1jh_, d3h1jj_, d3h1jn1, d3h1jn2, d3h1jo1, d3h1jo2, d3h1jp1, d3h1jp2, d3h1jq1, d3h1jq2, d3h1jr2, d3h1js_, d3h1jt_, d3h1ju_, d3h1jw_
        automated match to d3l70e1
        complexed with cdl, fes, gol, hec, hem, pee, plc, sma, unl, uq
      2. 3025939Domain d3h1jr1: 3h1j R:1-69 [262288]
        Other proteins in same PDB: d3h1ja1, d3h1ja2, d3h1jb1, d3h1jb2, d3h1jc1, d3h1jc2, d3h1jd1, d3h1jd2, d3h1je2, d3h1jf_, d3h1jg_, d3h1jh_, d3h1jj_, d3h1jn1, d3h1jn2, d3h1jo1, d3h1jo2, d3h1jp1, d3h1jp2, d3h1jq1, d3h1jq2, d3h1jr2, d3h1js_, d3h1jt_, d3h1ju_, d3h1jw_
        automated match to d3l70e1
        complexed with cdl, fes, gol, hec, hem, pee, plc, sma, unl, uq
    3. Domains for 3l70:
      1. 3025924Domain d3l70e1: 3l70 E:1-69 [260679]
        Other proteins in same PDB: d3l70a1, d3l70a2, d3l70b1, d3l70b2, d3l70c1, d3l70c2, d3l70d1, d3l70d2, d3l70e2, d3l70f_, d3l70g_, d3l70h_, d3l70j_, d3l70n1, d3l70o1, d3l70o2, d3l70p1, d3l70p2, d3l70q1, d3l70q2, d3l70r2, d3l70s_, d3l70t_, d3l70u_, d3l70w_
        automated match to d1bcce2
        complexed with bog, cdl, fes, gol, hec, hem, jzv, pee, uq
      2. 3025925Domain d3l70r1: 3l70 R:1-69 [262291]
        Other proteins in same PDB: d3l70a1, d3l70a2, d3l70b1, d3l70b2, d3l70c1, d3l70c2, d3l70d1, d3l70d2, d3l70e2, d3l70f_, d3l70g_, d3l70h_, d3l70j_, d3l70n1, d3l70o1, d3l70o2, d3l70p1, d3l70p2, d3l70q1, d3l70q2, d3l70r2, d3l70s_, d3l70t_, d3l70u_, d3l70w_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, jzv, pee, uq
    4. Domains for 3l71:
      1. 3025930Domain d3l71e1: 3l71 E:1-69 [262293]
        Other proteins in same PDB: d3l71a1, d3l71a2, d3l71b1, d3l71b2, d3l71c1, d3l71c2, d3l71d1, d3l71d2, d3l71e2, d3l71f_, d3l71g_, d3l71h_, d3l71j_, d3l71n1, d3l71n2, d3l71o1, d3l71o2, d3l71p1, d3l71p2, d3l71q1, d3l71q2, d3l71r2, d3l71s_, d3l71t_, d3l71u_, d3l71w_
        automated match to d3l70e1
        complexed with azo, bog, cdl, fes, gol, hec, hem, pee, uq
      2. 3025931Domain d3l71r1: 3l71 R:1-69 [262295]
        Other proteins in same PDB: d3l71a1, d3l71a2, d3l71b1, d3l71b2, d3l71c1, d3l71c2, d3l71d1, d3l71d2, d3l71e2, d3l71f_, d3l71g_, d3l71h_, d3l71j_, d3l71n1, d3l71n2, d3l71o1, d3l71o2, d3l71p1, d3l71p2, d3l71q1, d3l71q2, d3l71r2, d3l71s_, d3l71t_, d3l71u_, d3l71w_
        automated match to d3l70e1
        complexed with azo, bog, cdl, fes, gol, hec, hem, pee, uq
    5. Domains for 3l72:
      1. 3025934Domain d3l72e1: 3l72 E:1-69 [262297]
        Other proteins in same PDB: d3l72a1, d3l72a2, d3l72b1, d3l72b2, d3l72c1, d3l72c2, d3l72d1, d3l72d2, d3l72e2, d3l72f_, d3l72g_, d3l72h_, d3l72j_, d3l72n1, d3l72n2, d3l72o1, d3l72o2, d3l72p1, d3l72p2, d3l72q1, d3l72q2, d3l72r2, d3l72s_, d3l72t_, d3l72u_, d3l72w_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, ikr, pee, uq
      2. 3025935Domain d3l72r1: 3l72 R:1-69 [262299]
        Other proteins in same PDB: d3l72a1, d3l72a2, d3l72b1, d3l72b2, d3l72c1, d3l72c2, d3l72d1, d3l72d2, d3l72e2, d3l72f_, d3l72g_, d3l72h_, d3l72j_, d3l72n1, d3l72n2, d3l72o1, d3l72o2, d3l72p1, d3l72p2, d3l72q1, d3l72q2, d3l72r2, d3l72s_, d3l72t_, d3l72u_, d3l72w_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, ikr, pee, uq
    6. Domains for 3l73:
      1. 3025932Domain d3l73e1: 3l73 E:1-69 [262301]
        Other proteins in same PDB: d3l73a1, d3l73a2, d3l73b1, d3l73b2, d3l73c1, d3l73c2, d3l73d1, d3l73d2, d3l73e2, d3l73f_, d3l73g_, d3l73h_, d3l73j_, d3l73n1, d3l73n2, d3l73o1, d3l73o2, d3l73p1, d3l73p2, d3l73q1, d3l73q2, d3l73r2, d3l73s_, d3l73t_, d3l73u_, d3l73w_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, jzz, pee, uq
      2. 3025933Domain d3l73r1: 3l73 R:1-69 [262303]
        Other proteins in same PDB: d3l73a1, d3l73a2, d3l73b1, d3l73b2, d3l73c1, d3l73c2, d3l73d1, d3l73d2, d3l73e2, d3l73f_, d3l73g_, d3l73h_, d3l73j_, d3l73n1, d3l73n2, d3l73o1, d3l73o2, d3l73p1, d3l73p2, d3l73q1, d3l73q2, d3l73r2, d3l73s_, d3l73t_, d3l73u_, d3l73w_
        automated match to d3l70e1
        complexed with bog, cdl, fes, gol, hec, hem, jzz, pee, uq
    7. Domains for 3l74:
      1. 3025926Domain d3l74e1: 3l74 E:1-69 [262305]
        Other proteins in same PDB: d3l74a1, d3l74a2, d3l74b1, d3l74b2, d3l74c1, d3l74c2, d3l74d1, d3l74d2, d3l74e2, d3l74f_, d3l74g_, d3l74h_, d3l74j_, d3l74n1, d3l74n2, d3l74o1, d3l74o2, d3l74p1, d3l74p2, d3l74q1, d3l74q2, d3l74r2, d3l74s_, d3l74t_, d3l74u_, d3l74w_
        automated match to d3l70e1
        complexed with azi, bog, cdl, fes, fmx, hec, hem, pee, unl, uq
      2. 3025927Domain d3l74r1: 3l74 R:1-69 [262307]
        Other proteins in same PDB: d3l74a1, d3l74a2, d3l74b1, d3l74b2, d3l74c1, d3l74c2, d3l74d1, d3l74d2, d3l74e2, d3l74f_, d3l74g_, d3l74h_, d3l74j_, d3l74n1, d3l74n2, d3l74o1, d3l74o2, d3l74p1, d3l74p2, d3l74q1, d3l74q2, d3l74r2, d3l74s_, d3l74t_, d3l74u_, d3l74w_
        automated match to d3l70e1
        complexed with azi, bog, cdl, fes, fmx, hec, hem, pee, unl, uq
    8. Domains for 3l75:
      1. 3025928Domain d3l75e1: 3l75 E:1-69 [262309]
        Other proteins in same PDB: d3l75a1, d3l75a2, d3l75b1, d3l75b2, d3l75c1, d3l75c2, d3l75d1, d3l75d2, d3l75e2, d3l75f_, d3l75g_, d3l75h_, d3l75j_, d3l75n1, d3l75n2, d3l75o1, d3l75o2, d3l75p1, d3l75p2, d3l75q1, d3l75q2, d3l75r2, d3l75s_, d3l75t_, d3l75u_, d3l75w_
        automated match to d3l70e1
        complexed with azi, bog, cdl, fes, fnm, hec, hem, pee, unl, uq
      2. 3025929Domain d3l75r1: 3l75 R:1-69 [262311]
        Other proteins in same PDB: d3l75a1, d3l75a2, d3l75b1, d3l75b2, d3l75c1, d3l75c2, d3l75d1, d3l75d2, d3l75e2, d3l75f_, d3l75g_, d3l75h_, d3l75j_, d3l75n1, d3l75n2, d3l75o1, d3l75o2, d3l75p1, d3l75p2, d3l75q1, d3l75q2, d3l75r2, d3l75s_, d3l75t_, d3l75u_, d3l75w_
        automated match to d3l70e1
        complexed with azi, bog, cdl, fes, fnm, hec, hem, pee, unl, uq
  3. 3025940Cow (Bos taurus) [TaxId:9913] [254897] (2 PDB entries)
    1. Domain for 1sqq:
    2. Domain for 5okd:
  4. 3025943Mastigocladus laminosus [TaxId:83541] [255131] (4 PDB entries)
    1. Domains for 1um3:
      1. 3025947Domain d1um3d1: 1um3 D:12-45 [303146]
        Other proteins in same PDB: d1um3a_, d1um3b_, d1um3d2, d1um3f_, d1um3h_, d1um3n_, d1um3o_, d1um3q2, d1um3s_, d1um3t_, d1um3u_
        automated match to d2e76d2
        complexed with bcr, cla, fes, hem, opc, pl9, tds
      2. 3025948Domain d1um3q1: 1um3 Q:12-45 [303152]
        Other proteins in same PDB: d1um3a_, d1um3b_, d1um3d2, d1um3f_, d1um3h_, d1um3n_, d1um3o_, d1um3q2, d1um3s_, d1um3t_, d1um3u_
        automated match to d2e76d2
        complexed with bcr, cla, fes, hem, opc, pl9, tds
    2. Domain for 2e74:
    3. Domain for 4h13:
    4. Domain for 4pv1:

More info for Protein automated matches from f.23.12.0: automated matches

Timeline for Protein automated matches from f.23.12.0: automated matches: