Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1988413Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 1988414Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 1990025Family a.25.1.2: Ribonucleotide reductase-like [47253] (9 protein domains)
  6. 1990319Protein automated matches [190435] (11 species)
    not a true protein

Species:

  1. 1990320Castor bean (Ricinus communis) [TaxId:3988] [187330] (3 PDB entries)
    1. Domains for 2j2f:
      1. 1990321Domain d2j2fa_: 2j2f A: [165816]
        automated match to d1oq4a_
        complexed with fe; mutant
      2. 1990322Domain d2j2fb_: 2j2f B: [165817]
        automated match to d1oq4a_
        complexed with fe; mutant
      3. 1990323Domain d2j2fc_: 2j2f C: [165818]
        automated match to d1oq4a_
        complexed with fe; mutant
      4. 1990324Domain d2j2fd_: 2j2f D: [165819]
        automated match to d1oq4a_
        complexed with fe; mutant
      5. 1990325Domain d2j2fe_: 2j2f E: [165820]
        automated match to d1oq4a_
        complexed with fe; mutant
      6. 1990326Domain d2j2ff_: 2j2f F: [165821]
        automated match to d1oq4a_
        complexed with fe; mutant
    2. Domains for 2xz0:
      1. 1990327Domain d2xz0a_: 2xz0 A: [244642]
        Other proteins in same PDB: d2xz0d_
        automated match to d2j2fa_
        complexed with edo, fe, zn
      2. 1990328Domain d2xz0b_: 2xz0 B: [244643]
        Other proteins in same PDB: d2xz0d_
        automated match to d2j2fa_
        complexed with edo, fe, zn
      3. 1990329Domain d2xz0c_: 2xz0 C: [244644]
        Other proteins in same PDB: d2xz0d_
        automated match to d2j2fa_
        complexed with edo, fe, zn
    3. Domains for 4v0j:
      1. 1990330Domain d4v0ja_: 4v0j A: [276364]
        automated match to d2uw1b_
        complexed with fe2, gol; mutant
      2. 1990331Domain d4v0jb_: 4v0j B: [276365]
        automated match to d2uw1b_
        complexed with fe2, gol; mutant
      3. 1990332Domain d4v0jc_: 4v0j C: [276366]
        automated match to d2uw1b_
        complexed with fe2, gol; mutant
      4. 1990333Domain d4v0jd_: 4v0j D: [276373]
        automated match to d2uw1b_
        complexed with fe2, gol; mutant
      5. 1990334Domain d4v0je_: 4v0j E: [276374]
        automated match to d2uw1b_
        complexed with fe2, gol; mutant
      6. 1990335Domain d4v0jf_: 4v0j F: [276367]
        automated match to d2uw1b_
        complexed with fe2, gol; mutant
  2. 1990336Chlamydia trachomatis [TaxId:813] [225098] (5 PDB entries)
    1. Domain for 2ani:
    2. Domains for 4d8f:
      1. 1990350Domain d4d8fa1: 4d8f A:1-320 [251381]
        Other proteins in same PDB: d4d8fa2, d4d8fb2, d4d8fc2, d4d8fd2
        automated match to d2ania_
        complexed with acy, fe, mn
      2. 1990351Domain d4d8fb1: 4d8f B:1-324 [251382]
        Other proteins in same PDB: d4d8fa2, d4d8fb2, d4d8fc2, d4d8fd2
        automated match to d2ania_
        complexed with acy, fe, mn
      3. 1990352Domain d4d8fc1: 4d8f C:1-318 [251383]
        Other proteins in same PDB: d4d8fa2, d4d8fb2, d4d8fc2, d4d8fd2
        automated match to d2ania_
        complexed with acy, fe, mn
      4. 1990353Domain d4d8fd1: 4d8f D:1-328 [251384]
        Other proteins in same PDB: d4d8fa2, d4d8fb2, d4d8fc2, d4d8fd2
        automated match to d2ania_
        complexed with acy, fe, mn
    3. Domains for 4d8g:
      1. 1990341Domain d4d8ga1: 4d8g A:1-318 [251385]
        Other proteins in same PDB: d4d8ga2, d4d8gb2, d4d8gc2, d4d8gd2
        automated match to d2ania_
        complexed with fe, mn
      2. 1990342Domain d4d8gb1: 4d8g B:1-324 [251386]
        Other proteins in same PDB: d4d8ga2, d4d8gb2, d4d8gc2, d4d8gd2
        automated match to d2ania_
        complexed with fe, mn
      3. 1990343Domain d4d8gc1: 4d8g C:1-318 [251387]
        Other proteins in same PDB: d4d8ga2, d4d8gb2, d4d8gc2, d4d8gd2
        automated match to d2ania_
        complexed with fe, mn
      4. 1990344Domain d4d8gd1: 4d8g D:1-329 [251388]
        Other proteins in same PDB: d4d8ga2, d4d8gb2, d4d8gc2, d4d8gd2
        automated match to d2ania_
        complexed with fe, mn
    4. Domains for 4m1h:
      1. 1990337Domain d4m1ha1: 4m1h A:1-322 [253727]
        Other proteins in same PDB: d4m1ha2, d4m1hb2, d4m1hc2, d4m1hd2
        automated match to d2ania_
      2. 1990338Domain d4m1hb1: 4m1h B:1-328 [253728]
        Other proteins in same PDB: d4m1ha2, d4m1hb2, d4m1hc2, d4m1hd2
        automated match to d2ania_
      3. 1990339Domain d4m1hc1: 4m1h C:1-329 [253729]
        Other proteins in same PDB: d4m1ha2, d4m1hb2, d4m1hc2, d4m1hd2
        automated match to d2ania_
      4. 1990340Domain d4m1hd1: 4m1h D:1-328 [253730]
        Other proteins in same PDB: d4m1ha2, d4m1hb2, d4m1hc2, d4m1hd2
        automated match to d2ania_
    5. Domains for 4m1i:
      1. 1990345Domain d4m1ia1: 4m1i A:1-327 [253731]
        Other proteins in same PDB: d4m1ia2, d4m1ib2, d4m1ic2, d4m1id2
        automated match to d2ania_
        complexed with acy, fe, mn, p6g
      2. 1990346Domain d4m1ib1: 4m1i B:1-320 [253732]
        Other proteins in same PDB: d4m1ia2, d4m1ib2, d4m1ic2, d4m1id2
        automated match to d2ania_
        complexed with acy, fe, mn, p6g
      3. 1990347Domain d4m1ic1: 4m1i C:1-327 [253733]
        Other proteins in same PDB: d4m1ia2, d4m1ib2, d4m1ic2, d4m1id2
        automated match to d2ania_
        complexed with acy, fe, mn, p6g
      4. 1990348Domain d4m1id1: 4m1i D:1-328 [253734]
        Other proteins in same PDB: d4m1ia2, d4m1ib2, d4m1ic2, d4m1id2
        automated match to d2ania_
        complexed with acy, fe, mn, p6g
  3. 1990354Escherichia coli K-12 [TaxId:83333] [255975] (6 PDB entries)
    1. Domain for 3n37:
    2. Domain for 3n38:
    3. Domains for 3n39:
      1. 1990362Domain d3n39a_: 3n39 A: [247845]
        automated match to d1uzrb_
        complexed with fmn, mn
      2. 1990363Domain d3n39b_: 3n39 B: [247846]
        automated match to d1uzrb_
        complexed with fmn, mn
    4. Domains for 3n3a:
      1. 1990358Domain d3n3aa_: 3n3a A: [247847]
        automated match to d1uzrb_
        complexed with fmn, mn
      2. 1990359Domain d3n3ab_: 3n3a B: [247848]
        automated match to d1uzrb_
        complexed with fmn, mn
    5. Domains for 3n3b:
      1. 1990360Domain d3n3ba_: 3n3b A: [247849]
        automated match to d1uzrb_
        complexed with fmn, mn, peo
      2. 1990361Domain d3n3bb_: 3n3b B: [247850]
        automated match to d1uzrb_
        complexed with fmn, mn, peo
    6. Domain for 4m1f:
  4. 1990364Escherichia coli [TaxId:511145] [189613] (7 PDB entries)
    1. Domains for 3pvr:
      1. 1990369Domain d3pvrb1: 3pvr B:2-236 [184015]
        Other proteins in same PDB: d3pvrb2, d3pvrc2
        automated match to d1otka_
        complexed with byc, gol
      2. 1990370Domain d3pvrc1: 3pvr C:2-248 [184016]
        Other proteins in same PDB: d3pvrb2, d3pvrc2
        automated match to d1otka_
        complexed with byc, gol
    2. Domains for 3pvt:
      1. 1990365Domain d3pvtb1: 3pvt B:2-237 [184017]
        Other proteins in same PDB: d3pvtb2, d3pvtc2
        automated match to d1otka_
        complexed with 3hc, gol
      2. 1990366Domain d3pvtc1: 3pvt C:2-248 [184018]
        Other proteins in same PDB: d3pvtb2, d3pvtc2
        automated match to d1otka_
        complexed with 3hc, gol
    3. Domains for 3pvy:
      1. 1990367Domain d3pvyb1: 3pvy B:2-238 [184023]
        Other proteins in same PDB: d3pvyb2, d3pvyc2
        automated match to d1otka_
        complexed with coa, gol
      2. 1990368Domain d3pvyc1: 3pvy C:2-248 [184024]
        Other proteins in same PDB: d3pvyb2, d3pvyc2
        automated match to d1otka_
        complexed with coa, gol
    4. Domains for 3pw1:
      1. 1990371Domain d3pw1b1: 3pw1 B:2-237 [184025]
        Other proteins in same PDB: d3pw1b2, d3pw1c2
        automated match to d1otka_
        complexed with faq, gol
      2. 1990372Domain d3pw1c1: 3pw1 C:2-248 [184026]
        Other proteins in same PDB: d3pw1b2, d3pw1c2
        automated match to d1otka_
        complexed with faq, gol
    5. Domains for 3pw8:
      1. 1990381Domain d3pw8a_: 3pw8 A: [184027]
        automated match to d1otka_
        complexed with aco
      2. 1990382Domain d3pw8b_: 3pw8 B: [184028]
        automated match to d1otka_
        complexed with aco
    6. Domains for 3pwq:
      1. 1990373Domain d3pwqa1: 3pwq A:2-248 [184043]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      2. 1990374Domain d3pwqb1: 3pwq B:2-248 [184044]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      3. 1990375Domain d3pwqe1: 3pwq E:2-248 [184045]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      4. 1990376Domain d3pwqg1: 3pwq G:2-248 [184046]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      5. 1990377Domain d3pwqi1: 3pwq I:2-238 [184047]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      6. 1990378Domain d3pwqj1: 3pwq J:2-238 [184048]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      7. 1990379Domain d3pwqk_: 3pwq K: [184049]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
      8. 1990380Domain d3pwqr1: 3pwq R:2-238 [184050]
        Other proteins in same PDB: d3pwqa2, d3pwqb2, d3pwqe2, d3pwqg2, d3pwqi2, d3pwqj2, d3pwqr2
        automated match to d1otka_
    7. Domains for 4ii4:
      1. 1990383Domain d4ii4b1: 4ii4 B:2-239 [259066]
        Other proteins in same PDB: d4ii4b2, d4ii4c2
        automated match to d3pvtc_
        complexed with byc; mutant
      2. 1990384Domain d4ii4c1: 4ii4 C:2-248 [262722]
        Other proteins in same PDB: d4ii4b2, d4ii4c2
        automated match to d3pvtc_
        complexed with byc; mutant
  5. 1990385Hedera helix [TaxId:4052] [187347] (1 PDB entry)
  6. 1990388Human (Homo sapiens) [TaxId:9606] [193902] (7 PDB entries)
    1. Domain for 2iyh:
    2. Domain for 3hf1:
    3. Domains for 3olj:
      1. 1990389Domain d3olja1: 3olj A:66-350 [200095]
        Other proteins in same PDB: d3olja2, d3oljb2, d3oljc2, d3oljd2
        automated match to d3oljd_
        complexed with na
      2. 1990390Domain d3oljb1: 3olj B:66-350 [200096]
        Other proteins in same PDB: d3olja2, d3oljb2, d3oljc2, d3oljd2
        automated match to d3oljd_
        complexed with na
      3. 1990391Domain d3oljc1: 3olj C:66-350 [200097]
        Other proteins in same PDB: d3olja2, d3oljb2, d3oljc2, d3oljd2
        automated match to d3oljd_
        complexed with na
      4. 1990392Domain d3oljd1: 3olj D:66-350 [196199]
        Other proteins in same PDB: d3olja2, d3oljb2, d3oljc2, d3oljd2
        automated match to d2uw2a1
        complexed with na
    4. Domains for 3vpm:
      1. 1990397Domain d3vpma1: 3vpm A:66-350 [201251]
        Other proteins in same PDB: d3vpma2, d3vpmb2
        automated match to d3vpmb_
        complexed with fe, mg; mutant
      2. 1990398Domain d3vpmb1: 3vpm B:66-350 [193903]
        Other proteins in same PDB: d3vpma2, d3vpmb2
        automated match to d2uw2a1
        complexed with fe, mg; mutant
    5. Domains for 3vpn:
      1. 1990393Domain d3vpna1: 3vpn A:66-350 [201252]
        Other proteins in same PDB: d3vpna2, d3vpnb2
        automated match to d3vpnb_
        complexed with fe, mg; mutant
      2. 1990394Domain d3vpnb1: 3vpn B:66-350 [193905]
        Other proteins in same PDB: d3vpna2, d3vpnb2
        automated match to d2uw2a1
        complexed with fe, mg; mutant
    6. Domains for 3vpo:
      1. 1990395Domain d3vpoa1: 3vpo A:66-350 [201253]
        Other proteins in same PDB: d3vpoa2, d3vpob2
        automated match to d3vpob_
        complexed with fe, mg; mutant
      2. 1990396Domain d3vpob1: 3vpo B:66-350 [193904]
        Other proteins in same PDB: d3vpoa2, d3vpob2
        automated match to d2uw2a1
        complexed with fe, mg; mutant
    7. Domains for 4djn:
      1. 1990400Domain d4djna_: 4djn A: [195471]
        automated match to d2uw2a1
        complexed with edo, so4
      2. 1990401Domain d4djnb_: 4djn B: [195470]
        automated match to d2uw2a1
        complexed with edo, so4
  7. 1990403Methylococcus capsulatus [TaxId:243233] [226584] (1 PDB entry)
  8. 1990408Plasmodium vivax [TaxId:5855] [226817] (1 PDB entry)
  9. 1990411Pseudomonas mendocina [TaxId:300] [188695] (20 PDB entries)
    1. Domains for 3dhg:
      1. 1990418Domain d3dhga_: 3dhg A: [173940]
        Other proteins in same PDB: d3dhgc_, d3dhgf_
        automated match to d1t0qa_
        complexed with azi, ca, fe
      2. 1990419Domain d3dhgd_: 3dhg D: [173942]
        Other proteins in same PDB: d3dhgc_, d3dhgf_
        automated match to d1t0qa_
        complexed with azi, ca, fe
    2. Domain for 3dhh:
    3. Domain for 3dhi:
    4. Domain for 3ge3:
    5. Domains for 3ge8:
      1. 1990428Domain d3ge8a_: 3ge8 A: [176570]
        Other proteins in same PDB: d3ge8c_, d3ge8e_, d3ge8g_, d3ge8h_
        automated match to d1t0qa_
        complexed with act, fe
      2. 1990429Domain d3ge8d_: 3ge8 D: [176572]
        Other proteins in same PDB: d3ge8c_, d3ge8e_, d3ge8g_, d3ge8h_
        automated match to d1t0qa_
        complexed with act, fe
    6. Domain for 3i5j:
    7. Domain for 3i63:
    8. Domain for 3q14:
    9. Domain for 3q2a:
    10. Domains for 3q3m:
      1. 1990412Domain d3q3ma_: 3q3m A: [184186]
        Other proteins in same PDB: d3q3mc_, d3q3me_, d3q3mg_, d3q3mh_
        automated match to d1t0qa_
        complexed with fe, z82
      2. 1990413Domain d3q3md_: 3q3m D: [184188]
        Other proteins in same PDB: d3q3mc_, d3q3me_, d3q3mg_, d3q3mh_
        automated match to d1t0qa_
        complexed with fe, z82
    11. Domain for 3q3n:
    12. Domain for 3q3o:
    13. Domain for 3ri7:
    14. Domains for 3rmk:
      1. 1990420Domain d3rmka_: 3rmk A: [196049]
        Other proteins in same PDB: d3rmkc_, d3rmkf_
        automated match to d3dhgd_
        complexed with bml, ca, fe, pge
      2. 1990421Domain d3rmkd_: 3rmk D: [200499]
        Other proteins in same PDB: d3rmkc_, d3rmkf_
        automated match to d3rmka_
        complexed with bml, ca, fe, pge
    15. Domains for 4p1b:
      1. 1990430Domain d4p1ba_: 4p1b A: [263408]
        Other proteins in same PDB: d4p1bc_, d4p1bf_, d4p1bh_, d4p1bi_
        automated match to d3ge8d_
        complexed with act, fe, fes, na, peg
      2. 1990431Domain d4p1bd_: 4p1b D: [263410]
        Other proteins in same PDB: d4p1bc_, d4p1bf_, d4p1bh_, d4p1bi_
        automated match to d3ge8d_
        complexed with act, fe, fes, na, peg
    16. Domains for 4p1c:
      1. 1990432Domain d4p1ca_: 4p1c A: [260212]
        Other proteins in same PDB: d4p1cc_, d4p1cf_, d4p1ch_, d4p1ci_
        automated match to d3ge8d_
        complexed with fe, fes, peg
      2. 1990433Domain d4p1cd_: 4p1c D: [259897]
        Other proteins in same PDB: d4p1cc_, d4p1cf_, d4p1ch_, d4p1ci_
        automated match to d3ge8d_
        complexed with fe, fes, peg
    17. Domains for 5tds:
      1. 2288793Domain d5tdsd_: 5tds D: [332094]
        Other proteins in same PDB: d5tdsc_, d5tdsf_
        automated match to d3dhgd_
        complexed with cl, fe, mbn, mg
      2. 2288911Domain d5tdsa_: 5tds A: [332212]
        Other proteins in same PDB: d5tdsc_, d5tdsf_
        automated match to d3dhgd_
        complexed with cl, fe, mbn, mg
    18. Domains for 5tdt:
      1. 2288787Domain d5tdta_: 5tdt A: [332088]
        Other proteins in same PDB: d5tdtc_, d5tdte_, d5tdtg_, d5tdth_
        automated match to d3dhgd_
        complexed with fe, mbn, per
      2. 2288791Domain d5tdtd_: 5tdt D: [332092]
        Other proteins in same PDB: d5tdtc_, d5tdte_, d5tdtg_, d5tdth_
        automated match to d3dhgd_
        complexed with fe, mbn, per
    19. Domain for 5tdu:
    20. Domains for 5tdv:
      1. 2288792Domain d5tdva_: 5tdv A: [332093]
        Other proteins in same PDB: d5tdvc_, d5tdve_, d5tdvg_, d5tdvh_
        automated match to d3dhia_
        complexed with fe, per
      2. 2288800Domain d5tdvd_: 5tdv D: [332101]
        Other proteins in same PDB: d5tdvc_, d5tdve_, d5tdvg_, d5tdvh_
        automated match to d3dhia_
        complexed with fe, per
  10. 2275396Escherichia coli [TaxId:745156] [318697] (2 PDB entries)
    1. Domain for 5ci0:
    2. Domain for 5ci1:
  11. 2275443Escherichia coli [TaxId:83334] [318744] (2 PDB entries)
    1. Domain for 5ci2:
    2. Domain for 5ci3:

More info for Protein automated matches from a.25.1.2: Ribonucleotide reductase-like

Timeline for Protein automated matches from a.25.1.2: Ribonucleotide reductase-like: