PDB entry 6vk8

View 6vk8 on RCSB PDB site
Description: Crystal Structure of Methylosinus trichosporium OB3b Soluble Methane Monooxygenase Hydroxylase and Regulatory Component Complex with small organic carboxylate at active center
Class: oxidoreductase
Keywords: Methane Monooxygenase Hydroxylase, OXIDOREDUCTASE
Deposited on 2020-01-18, released 2020-08-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methane monooxygenase component A alpha chain
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8a_
  • Chain 'B':
    Compound: Methane monooxygenase
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8b_
  • Chain 'C':
    Compound: Methane monooxygenase
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8c_
  • Chain 'D':
    Compound: Methane monooxygenase regulatory protein B
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8d_
  • Chain 'E':
    Compound: Methane monooxygenase component A alpha chain
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8e_
  • Chain 'F':
    Compound: Methane monooxygenase
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8f_
  • Chain 'G':
    Compound: Methane monooxygenase
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8g_
  • Chain 'H':
    Compound: Methane monooxygenase regulatory protein B
    Species: METHYLOSINUS TRICHOSPORIUM OB3B [TaxId:595536]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vk8h_
  • Heterogens: FE, SIN, EDO, BEZ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6vk8A (A:)
maislatkaatdalkvnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqf
kviakeyarmeaakderqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaa
samlwdsataaeqkngylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigpl
wkgmkrvfadgfisgdavecsvnlqlvgeacftnplivavtewasangdeitptvflsve
tdelrhmangyqtvvsiandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvep
wvktwnrwvyedwggiwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfar
lalpdeedqawfeanypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrv
sqvpfipslakgtgslrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelse
viaeghgvrsdgktliaqphtrgdnlwtledikragcvfpdplakf

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8A (A:)
dalkvnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqfkviakeyarme
aakderqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaasamlwdsataa
eqkngylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigplwkgmkrvfadg
fisgdavecsvnlqlvgeacftnplivavtewasangdeitptvflsvetdelrhmangy
qtvvsiandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvepwvktwnrwvye
dwggiwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfarlalpdeedqaw
feanypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrvsqvpfipslak
gtgslrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelseviaeghgvrsd
gktliaqphtrgdnlwtledikragcvfpdplakf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vk8B (B:)
msqpqssqvtkrgltdperaaiiaaavpdhaldtqrkyhyfiqprwkrlseyeqlscyaq
pnpdwiaggldwgdwtqkfhggrpswgnestelrttdwyrhrdparrwhhpyvkdkseea
rytqrflaayssegsirtidpywrdeilnkyfgallyseyglfnahssvgrdclsdtirq
tavfaaldkvdnaqmiqmerlfiaklvpgfdastdvpkkiwttdpiysgaratvqeiwqg
vqdwneilwaghavydatfgqfarreffqrlatvygdtltpfftaqsqtyfqttrgaidd
lfvyclandsefgahnrtflnawtehylassvaalkdfvglyakvekvagatdragvsea
lqrvfgdwkidyadkigfrvdvdqkvdavlagykn

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8B (B:)
pqssqvtkrgltdperaaiiaaavpdhaldtqrkyhyfiqprwkrlseyeqlscyaqpnp
dwiaggldwgdwtqkfhggrpswgnestelrttdwyrhrdparrwhhpyvkdkseearyt
qrflaayssegsirtidpywrdeilnkyfgallyseyglfnahssvgrdclsdtirqtav
faaldkvdnaqmiqmerlfiaklvpgfdastdvpkkiwttdpiysgaratvqeiwqgvqd
wneilwaghavydatfgqfarreffqrlatvygdtltpfftaqsqtyfqttrgaiddlfv
yclandsefgahnrtflnawtehylassvaalkdfvglyakvekvagatdragvsealqr
vfgdwkidyadkigfrvdvdqkvdavlagykn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6vk8C (C:)
makrepihdnsirteweakiakltsvdqatkfiqdfrlaytspfrksydidvdyqyierk
ieeklsvlkteklpvadlitkattgedaaaveatwiakikaakskyeaerihiefrqlyk
ppvlpvnvflrtdaalgtvlmeirntdyygtpleglrkergvkvlhlqa

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8C (C:)
akrepihdnsirteweakiakltsvdqatkfiqdfrlaytspfrksydidvdyqyierki
eeklsvlkteklpvadlitkattgedaaaveatwiakikaakskyeaerihiefrqlykp
pvlpvnvflrtdaalgtvlmeirntdyygtpleglrkergvkvlhlqa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6vk8D (D:)
mssahnaynagimqktgkafadeffaeenqvvhesnavvlvlmksdeidaiiedivlkgg
kaknpsivvedkagfwwikadgaieidaaeagellgkpfsvydllinvsstvgraytlgt
kftitselmgldraltdi

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8D (D:)
ssahnaynagimqktgkafadeffaeenqvvhesnavvlvlmksdeidaiiedivlkggk
aknpsivvedkagfwwikadgaieidaaeagellgkpfsvydllinvsstvgraytlgtk
ftitselmgldr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6vk8E (E:)
maislatkaatdalkvnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqf
kviakeyarmeaakderqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaa
samlwdsataaeqkngylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigpl
wkgmkrvfadgfisgdavecsvnlqlvgeacftnplivavtewasangdeitptvflsve
tdelrhmangyqtvvsiandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvep
wvktwnrwvyedwggiwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfar
lalpdeedqawfeanypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrv
sqvpfipslakgtgslrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelse
viaeghgvrsdgktliaqphtrgdnlwtledikragcvfpdplakf

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8E (E:)
dalkvnrapvgvepqevhkwlqsfnwdfkenrtkyptkyhmanetkeqfkviakeyarme
aakderqfgtlldgltrlgagnkvhprwgetmkvisnflevgeynaiaasamlwdsataa
eqkngylaqvldeirhthqcafinhyyskhyhdpaghndarrtraigplwkgmkrvfadg
fisgdavecsvnlqlvgeacftnplivavtewasangdeitptvflsvetdelrhmangy
qtvvsiandpasakflntdlnnafwtqqkyftpvlgylfeygskfkvepwvktwnrwvye
dwggiwigrlgkygvespaslrdakrdaywahhdlalaayamwplgfarlalpdeedqaw
feanypgwadhygkifnewkklgyedpksgfipyqwllanghdvyidrvsqvpfipslak
gtgslrvhefngkkhsltddwgerqwlieperyechnvfeqyegrelseviaeghgvrsd
gktliaqphtrgdnlwtledikragcvfpdplakf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6vk8F (F:)
msqpqssqvtkrgltdperaaiiaaavpdhaldtqrkyhyfiqprwkrlseyeqlscyaq
pnpdwiaggldwgdwtqkfhggrpswgnestelrttdwyrhrdparrwhhpyvkdkseea
rytqrflaayssegsirtidpywrdeilnkyfgallyseyglfnahssvgrdclsdtirq
tavfaaldkvdnaqmiqmerlfiaklvpgfdastdvpkkiwttdpiysgaratvqeiwqg
vqdwneilwaghavydatfgqfarreffqrlatvygdtltpfftaqsqtyfqttrgaidd
lfvyclandsefgahnrtflnawtehylassvaalkdfvglyakvekvagatdragvsea
lqrvfgdwkidyadkigfrvdvdqkvdavlagykn

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8F (F:)
pqssqvtkrgltdperaaiiaaavpdhaldtqrkyhyfiqprwkrlseyeqlscyaqpnp
dwiaggldwgdwtqkfhggrpswgnestelrttdwyrhrdparrwhhpyvkdkseearyt
qrflaayssegsirtidpywrdeilnkyfgallyseyglfnahssvgrdclsdtirqtav
faaldkvdnaqmiqmerlfiaklvpgfdastdvpkkiwttdpiysgaratvqeiwqgvqd
wneilwaghavydatfgqfarreffqrlatvygdtltpfftaqsqtyfqttrgaiddlfv
yclandsefgahnrtflnawtehylassvaalkdfvglyakvekvagatdragvsealqr
vfgdwkidyadkigfrvdvdqkvdavlagykn

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6vk8G (G:)
makrepihdnsirteweakiakltsvdqatkfiqdfrlaytspfrksydidvdyqyierk
ieeklsvlkteklpvadlitkattgedaaaveatwiakikaakskyeaerihiefrqlyk
ppvlpvnvflrtdaalgtvlmeirntdyygtpleglrkergvkvlhlqa

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8G (G:)
akrepihdnsirteweakiakltsvdqatkfiqdfrlaytspfrksydidvdyqyierki
eeklsvlkteklpvadlitkattgedaaaveatwiakikaakskyeaerihiefrqlykp
pvlpvnvflrtdaalgtvlmeirntdyygtpleglrkergvkvlhlqa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6vk8H (H:)
mssahnaynagimqktgkafadeffaeenqvvhesnavvlvlmksdeidaiiedivlkgg
kaknpsivvedkagfwwikadgaieidaaeagellgkpfsvydllinvsstvgraytlgt
kftitselmgldraltdi

    Sequence, based on observed residues (ATOM records): (download) 
    >6vk8H (H:)
ssahnaynagimqktgkafadeffaeenqvvhesnavvlvlmksdeidaiiedivlkggk
aknpsivvedkagfwwikadgaieidaaeagellgkpfsvydllinvsstvgraytlgtk
ftitselmgldraltdi