PDB entry 5tdt

View 5tdt on RCSB PDB site
Description: Oxygenated toluene intermediate in toluene 4-monooxygenase (T4moHD) after reaction in the crystal
Class: oxidoreductase
Keywords: Intermediate, diiron, OXIDOREDUCTASE
Deposited on 2016-09-19, released 2017-03-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Toluene-4-monooxygenase system protein A
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00456
      • conflict (335-336)
    Domains in SCOPe 2.08: d5tdta_
  • Chain 'B':
    Compound: Toluene-4-monooxygenase system protein E
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoE
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Toluene-4-monooxygenase system protein B
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5tdtc_
  • Chain 'D':
    Compound: Toluene-4-monooxygenase system protein A
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q00456
      • conflict (335-336)
    Domains in SCOPe 2.08: d5tdtd_
  • Chain 'E':
    Compound: toluene-4-monooxygenase system protein d
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5tdte_
  • Chain 'F':
    Compound: Toluene-4-monooxygenase system protein E
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoE
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Toluene-4-monooxygenase system protein B
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5tdtg_
  • Chain 'H':
    Compound: toluene-4-monooxygenase system protein d
    Species: Pseudomonas mendocina [TaxId:300]
    Gene: tmoD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5tdth_
  • Heterogens: PER, MBN, FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5tdtA (A:)
mamhprkdwyeltratnwtpsyvteeqlfpermsghmgiplekwesydepyktsypeyvs
iqrekdagaysvkaalerakiyensdpgwistlkshygaiavgeyaavtgegrmarfska
pgnrnmatfgmmdelrhgqlqlffpheyckkdrqfdwawrayhsnewaaiaakhffddii
tgrdaisvaimltfsfetgftnmqflglaadaaeagdytfanlissiqtdesrhaqqggp
alqlliengkreeaqkkvdmaiwrawrlfavltgpvmdyytpledrsqsfkefmyewiig
qferslidlgldkpwywdlflkdidelhhsyhmgvwywrttawwnpaagvtpeerdwlee
kypgwnkrwgrcwdvitenvlndrmdlvspetlpsvcnmsqiplvgvpgddwnievfsle
hngrlyhfgsevdrwvfqqdpvqyqnhmnivdrflagqiqpmtlegalkymgfqsieemg
kdahdfawadkck

    Sequence, based on observed residues (ATOM records): (download) 
    >5tdtA (A:)
amhprkdwyeltratnwtpsyvteeqlfpermsghmgiplekwesydepyktsypeyvsi
qrekdagaysvkaalerakiyensdpgwistlkshygaiavgeyaavtgegrmarfskap
gnrnmatfgmmdelrhgqlqlffpheyckkdrqfdwawrayhsnewaaiaakhffddiit
grdaisvaimltfsfetgftnmqflglaadaaeagdytfanlissiqtdesrhaqqggpa
lqlliengkreeaqkkvdmaiwrawrlfavltgpvmdyytpledrsqsfkefmyewiigq
ferslidlgldkpwywdlflkdidelhhsyhmgvwywrttawwnpaagvtpeerdwleek
ypgwnkrwgrcwdvitenvlndrmdlvspetlpsvcnmsqiplvgvpgddwnievfsleh
ngrlyhfgsevdrwvfqqdpvqyqnhmnivdrflagqiqpmtlegalkymgfqsieemgk
dahdfawad

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5tdtC (C:)
msafpvhaafekdflvqlvvvdlndsmdqvaekvayhcvnrrvapregvmrvrkhrstel
fprdmtiaesglnptevidvvfee

    Sequence, based on observed residues (ATOM records): (download) 
    >5tdtC (C:)
safpvhaafekdflvqlvvvdlndsmdqvaekvayhcvnrrvapregvmrvrkhrstelf
prdmtiaesglnptevidvvfe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5tdtD (D:)
mamhprkdwyeltratnwtpsyvteeqlfpermsghmgiplekwesydepyktsypeyvs
iqrekdagaysvkaalerakiyensdpgwistlkshygaiavgeyaavtgegrmarfska
pgnrnmatfgmmdelrhgqlqlffpheyckkdrqfdwawrayhsnewaaiaakhffddii
tgrdaisvaimltfsfetgftnmqflglaadaaeagdytfanlissiqtdesrhaqqggp
alqlliengkreeaqkkvdmaiwrawrlfavltgpvmdyytpledrsqsfkefmyewiig
qferslidlgldkpwywdlflkdidelhhsyhmgvwywrttawwnpaagvtpeerdwlee
kypgwnkrwgrcwdvitenvlndrmdlvspetlpsvcnmsqiplvgvpgddwnievfsle
hngrlyhfgsevdrwvfqqdpvqyqnhmnivdrflagqiqpmtlegalkymgfqsieemg
kdahdfawadkck

    Sequence, based on observed residues (ATOM records): (download) 
    >5tdtD (D:)
amhprkdwyeltratnwtpsyvteeqlfpermsghmgiplekwesydepyktsypeyvsi
qrekdagaysvkaalerakiyensdpgwistlkshygaiavgeyaavtgegrmarfskap
gnrnmatfgmmdelrhgqlqlffpheyckkdrqfdwawrayhsnewaaiaakhffddiit
grdaisvaimltfsfetgftnmqflglaadaaeagdytfanlissiqtdesrhaqqggpa
lqlliengkreeaqkkvdmaiwrawrlfavltgpvmdyytpledrsqsfkefmyewiigq
ferslidlgldkpwywdlflkdidelhhsyhmgvwywrttawwnpaagvtpeerdwleek
ypgwnkrwgrcwdvitenvlndrmdlvspetlpsvcnmsqiplvgvpgddwnievfsleh
ngrlyhfgsevdrwvfqqdpvqyqnhmnivdrflagqiqpmtlegalkymgfqsieemgk
dahdfawadk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5tdtE (E:)
mstladqalhnnnvgpiiragdlvepvietaeidnpgkeitvedrrayvriaaegelilt
rktleeqlgrpfnmqeleinlasfagqiqadedqirfyfdktm

    Sequence, based on observed residues (ATOM records): (download) 
    >5tdtE (E:)
stladqalhnnnvgpiiragdlvepvietaeidnpgkeitvedrrayvriaaegeliltr
ktleeqlgrpfnmqeleinlasfagqiqadedqirfyfdktm

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >5tdtG (G:)
msafpvhaafekdflvqlvvvdlndsmdqvaekvayhcvnrrvapregvmrvrkhrstel
fprdmtiaesglnptevidvvfee

    Sequence, based on observed residues (ATOM records): (download) 
    >5tdtG (G:)
safpvhaafekdflvqlvvvdlndsmdqvaekvayhcvnrrvapregvmrvrkhrstelf
prdmtiaesglnptevidvvfe

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5tdtH (H:)
mstladqalhnnnvgpiiragdlvepvietaeidnpgkeitvedrrayvriaaegelilt
rktleeqlgrpfnmqeleinlasfagqiqadedqirfyfdktm

    Sequence, based on observed residues (ATOM records): (download) 
    >5tdtH (H:)
tladqalhnnnvgpiiragdlvepvietaeidnpgkeitvedrrayvriaaegeliltrk
tleeqlgrpfnmqeleinlasfagqiqadedqirfyfdktm